CX043874

Overview
NameCX043874
Unique NameCX043874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3607 contig Csv1_Contig3607:5..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043874 vs. ExPASy Swiss-Prot
Match: UBX2_SCHPO (UBX domain-containing protein 2 OS=Schizosaccharomyces pombe GN=ubx2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.142e-14
Identity = 60/243 (24.69%), Postives = 113/243 (46.50%), Query Frame = -1 
Query:  198 EAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASM----ETIKXXXXXXXXXXXXXXXDKEETSATEKPAYPALPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 914
            E+V + I  +F+F Q+ DD   G +   +Y + S P + ++DP TG++++ W     P   +  L  F++G   ++ +    K P G+ +   QK  +    E+E++ +A+AAS+     T +                 +     +     A  EEP    ++  R+ +R+P+G R  R F  TDP+  +++Y     EG++ +PF LT        SLD     T +++G+ N  +   ++
Sbjct:  198 ESVKEVIRAHFLFLQLLDDEEPGMEFKRFYPVRSTPHIAILDPRTGERVKEWSKSFTPADFVIALNDFLEGCTLDETS--GRKNPLGAKS---QKPVEAMS-EDEQMHKAIAASLGNGNSTTESQGESSSQQAESHGVADDTVHKIDSAECDA--EEPSPGPNVT-RIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSLTFQRKSLWTSLD----STIKEAGIQNTALQFEFQ 427
The following BLAST results are available for this feature:
BLAST of CX043874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBX2_SCHPO1.142e-1424.69UBX domain-containing protein 2 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14A03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A03-B6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043874 ID=CX043874; Name=CX043874; organism=Citrus sinensis; type=EST; length=914bp
GAATTGGGGGTACCGGGCCCCCTTAATCTTGCCCCATAATGTAAATCACA
TATACATGATAAATAAAGCAGATTGGAAGTACATAACATAAGAAACCAAA
AGGAGCATATAATAAACAAAAGCCAAAAATCTTAGCCCAAGATTCCAGCA
GTTGAAGAAACTTGTTAAAACACACAGCCTGACACAATGAATTTTCATTC
CCAAGTAACTGAGATCATAGCATTGGCAAGCCCTGAGTCCTCGAAAGTCA
ATTTGCTATCATAATCAAGGGACTTCGTTGCCCCTGGTATAGCATGCGTC
AACCGAAATGGCTTCATCTCAGATCCCTCTAGTTGAGAATAGCAGTAAGA
CCATAGTAGCTGTATCGGATCTGTACGCAAGAAATTTCTCTGCATCCTAC
GACCATCAGGGAGACGAACTCCGACCCGGCAAAGGAGGCTTCTATCGACC
TTGGGTTCTTCAGGAAGTGCAGGATATGCAGGCTTCTCAGTGGCCGATGT
TTCCTCCTTGTCAGTACTCGCTACATCTGTATCACTGGAAGATACTCCAC
TGGCATCTTTTATGGTTTCCATGGAAGCTGCTAGTGCCTGCAGCAATTCC
TCATTCTCTATATCGGGTTTATCCTTATTCTTTTGTTGAGGAGTTGTAGA
ACTTCCTCTTGGACGTTTATGAGAAACTTTTGCATGTTGTTCCCTCGGGC
CACCATCCATGAAAGGTACTAGATCCTCAAGCAAACTCTCTGGTTGAACC
ATTCCACACCATGAACGCATTTTTTGGCCTGTGATTGGGTCAACGACAAG
AACTACAGGAATAGAATCCAATTTATAATAGGTGCAAACTTTCTTGCCCT
CACTCGTATCATCATACACCTGCCAGAAGATAAAGTTTGTACTAATAGTT
TGGGAAACAGCTTC
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