CX043872
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043872 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21 Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = -3 Query: 471 PMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 833 P+R+ +ATPK S + ++ P + Q ++ N+T+FVG L VS+E+L+ F FGEI+ VKIP GKGCGFVQF NR+ AE+A+ +LQG +G +RLSWGRN Sbjct: 257 PIRVGLATPK--SKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of CX043872 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17 Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = -3 Query: 471 PMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 833 P+RI VA+PK + AL + SN Q S + N T+FVG L S++S++DL+ F FG IL++KIP GKGCGFVQ++ + AE A+ +QG +G +RL+WG N Sbjct: 253 PLRISVASPKSRASIAADS---ALGIVPTSTSNRQPNQDLCSM-DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of CX043872 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16 Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = -3 Query: 471 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 701 + NN T+F+G L S V++++LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +QG I VRLSWGR+ Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
BLAST of CX043872 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14 Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = -3 Query: 474 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 701 + N T+FVG L ++ LR F FG IL+V+IP GK CGFV+F R DAE ++Q LQG +G +RLSWGR Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431 The following BLAST results are available for this feature:
BLAST of CX043872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043872 ID=CX043872; Name=CX043872; organism=Citrus sinensis; type=EST; length=835bpback to top |