CX043872

Overview
NameCX043872
Unique NameCX043872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1578 contig Csv1_Contig1578:354..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043872 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = -3
Query:  471 PMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 833
            P+R+ +ATPK  S          + ++  P    +  Q      ++ N+T+FVG L   VS+E+L+  F  FGEI+ VKIP GKGCGFVQF NR+ AE+A+ +LQG  +G   +RLSWGRN
Sbjct:  257 PIRVGLATPK--SKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of CX043872 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = -3
Query:  471 PMRIDVATPKKASGXXXXXXXQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 833
            P+RI VA+PK  +         AL +     SN    Q   S  +  N T+FVG L S++S++DL+  F  FG IL++KIP GKGCGFVQ++ +  AE A+  +QG  +G   +RL+WG N
Sbjct:  253 PLRISVASPKSRASIAADS---ALGIVPTSTSNRQPNQDLCSM-DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of CX043872 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = -3
Query:  471 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 701
            + NN T+F+G L S V++++LR  F  FG I+ VKIPVGK CGFVQ+ +R  AE A+  +QG  I    VRLSWGR+
Sbjct:  309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CX043872 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  474 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 701
            +  N T+FVG L    ++  LR  F  FG IL+V+IP GK CGFV+F  R DAE ++Q LQG  +G   +RLSWGR
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431          
The following BLAST results are available for this feature:
BLAST of CX043872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YG41_SCHPO7.066e-2143.80Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO2.779e-1741.32RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST5.240e-1651.95Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NGR1_YEAST1.686e-1450.00Negative growth regulatory protein NGR1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14A01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A01-B2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043872 ID=CX043872; Name=CX043872; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTTTTTTTTTCAGGACCAAAACTGATGGGCATTCAAGAGTTCT
GTTCTTGGCATTCTCCTCTTGAGTTTAGTTCAAAAACACAAACATAACAA
TCCCTCTCAAACAGACTCCCCAAGAATGAAAAATAATAATACAAGCCTCA
CACATCTCCAAGCTATTAAGTATATTCCAGCTACAAAATTCTGCAAACTA
CAGATTTAGCTACATATTCAGCAGCAAAATCCATCCTACTTTAGTTCATA
GATCTCATTGGGTAATTTCAGCCAGTTCAGCAAGTTCAGATTACACGGTG
TCGTACTACCCTCATACTTCTTAAGAAGCACCGGGAACCGCTGTTGCAGC
ATACATGTTTGGATCTTGATTTGGCGGAAAAGCATATCCATTGCCACTAT
AGCCCTGACCTCCATAGTGTGCCCCATTCCAGTGGTTACTGTGATCTCCT
CTCCACTGTTTGTTCCCAGGATTGCGACCCCAAGAAAGACGGACTGTTTG
CTTGCCTATAGCGGTCCCTTGTAACTTCTGCAATGCAACCTCAGCATCCT
TTCTGTTTGCAAATTGCACAAATCCACATCCTTTACCAACAGGTATTTTA
ACAGAAAGAATCTCACCAAACTGAGAAAAAGGCTCTCTGAGATCCTCATC
ACTGACATCAGAATCAAGTGCCCCAACAAATATAGTCGCATTATTGGACT
CGCCATCAGATTGAGAACCTTGGACCCTAGCACCATTTGACCCAGGTCCA
CCGGCCAATACAAGAGCTTGTGAAGAATACTGTTGTTGATATCCAGAAGC
CTTTTTGGGGGTTGCAACATCTATGCGCATCGGCC
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