CX043871

Overview
NameCX043871
Unique NameCX043871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3606 contig Csv1_Contig3606:1..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_DROPS (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 43/158 (27.22%), Postives = 80/158 (50.63%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLA---FATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 495
            ED +++  +      G D+ G  +    GK+FPA  +  E+   Y+  K+   +  G + I Y HT +   +NYP    LR +Y  LP + K  L+  Y +HP  W+++    F T    F++  +  K+  +  +++L++ I K ++EIP ++  +D
Sbjct:  375 EDLTEVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLI-KLLDPIVKGDYVISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTT----FMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 526          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_DROME (Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 43/158 (27.22%), Postives = 80/158 (50.63%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLA---FATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 495
            ED +++  +      G D+ G  +    GK+FPA  +  E+   Y+  K+   +  G + I Y HT +   +NYP    LR +Y  LP + K  L+  Y +HP  W+++    F T    F++  +  K+  +  +++L++ I K ++EIP ++  +D
Sbjct:  373 EDLTEVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLI-KLLDPIVKGDYVISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTT----FMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 524          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_XENTR (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 45/155 (29.03%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 495
            ED SD+ +L+     G D  G  +  +VG+  P  ++  E+   Y  H +   +    + +VY HT +  E N+P    L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S GL  K+  V  L  L++ +   +IEIP FV ++D
Sbjct:  328 EDLSDIAALKALYQSGVDNCGRTVMVVVGRNIPVLLIDMEKALLYFIHMM-DHVAAKEYVLVYFHT-LTGEHNHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFFTTFTVS-GLKDKVHQVESLHQLFSAVPPEQIEIPPFVLDYD 479          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_RAT (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 45/155 (29.03%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 495
            ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S GL  KI +V  LQ L++ I   +I+ P FV  +D
Sbjct:  329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS-GLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYD 480          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_MACFA (Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPD 543
            ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S GL  KI +V  L  L++ I   +I+ P FV  +D        T Y   PD
Sbjct:  293 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS-GLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENGPYYTSYPPSPD 460          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_HUMAN (Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPD 543
            ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S GL  KI +V  L  L++ I   +I+ P FV  +D        T Y   PD
Sbjct:  329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS-GLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENGPYYTSYPPSPD 496          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_MOUSE (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 44/155 (28.39%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 495
            ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + +VY HT +  + N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S GL  KI +V  LQ L++ I   +I+ P FV  +D
Sbjct:  330 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSDYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS-GLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYD 481          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_DANRE (Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio GN=gdap2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 43/156 (27.56%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDN 498
            ED SD+ +L+     G D  G  +  +VG+  P  ++  E+   Y  H +   +    + +VY HT +  E N+     L+ +Y+ + ++ K  L+  YF+HP   S+++      F +S GL  K+ ++  LQ L+  +   +I+IP FV  +D+
Sbjct:  338 EDLSDIAALKALYQTGVDLCGRTVMVVVGRNIPVMLIDMEKALLYFIH-VMDHITVKEYVMVYFHT-LTGEHNHLDTDFLKKLYDIVDAKFKKNLRAFYFVHPTFRSKVSTWFFTTFSVS-GLKDKVHHIENLQQLFTCVLPEQIDIPPFVLEYDS 490          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_BOVIN (Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPD 543
            ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S GL  KI +V  L  L++ I   +I+ P FV  +D        T Y   PD
Sbjct:  329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS-GLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENGPYYTSYLPSPD 496          
BLAST of CX043871 vs. ExPASy Swiss-Prot
Match: GDAP2_XENLA (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 48/163 (29.45%), Postives = 81/163 (49.69%), Query Frame = 1
Query:   31 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPL 519
            ED SD+ +L+     G D  G  +  +VG+  P  ++  E+   Y  H +   +    + +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S GL  K+  V  L  L+  I   +IEIP FV ++D   E+ PL
Sbjct:  328 EDLSDIAALKALYQSGVDNCGRSVMVVVGRNIPVLLIDMEKALLYFIH-MMDHVTAKDYVLVYFHT-LTGEHNHLDSDFLKNMYDIIDVKYKKNLKALYFVHPTFRSKVSTWFFTTFTVS-GLKDKVHQVESLHQLFTAIPPEQIEIPPFVLDYD-ARENGPL 486          
The following BLAST results are available for this feature:
BLAST of CX043871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GDAP2_DROPS7.540e-1427.22Protein GDAP2 homolog OS=Drosophila pseudoobscura ... [more]
GDAP2_DROME7.540e-1427.22Protein GDAP2 homolog OS=Drosophila melanogaster G... [more]
GDAP2_XENTR4.137e-1229.03Ganglioside-induced differentiation-associated pro... [more]
GDAP2_RAT7.057e-1229.03Ganglioside-induced differentiation-associated-pro... [more]
GDAP2_MACFA9.217e-1228.07Ganglioside-induced differentiation-associated pro... [more]
GDAP2_HUMAN9.217e-1228.07Ganglioside-induced differentiation-associated pro... [more]
GDAP2_MOUSE1.572e-1128.39Ganglioside-induced differentiation-associated pro... [more]
GDAP2_DANRE1.572e-1127.56Ganglioside-induced differentiation-associated pro... [more]
GDAP2_BOVIN1.572e-1128.07Ganglioside-induced differentiation-associated pro... [more]
GDAP2_XENLA3.502e-1129.45Ganglioside-induced differentiation-associated pro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13H12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13H12-P23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043871 ID=CX043871; Name=CX043871; organism=Citrus sinensis; type=EST; length=783bp
CACGATTGTGCCCAATATCTCTCGCCAGATGAAGACTTCTCTGATCTCGA
TTCTCTTCAATTCTTTTGCCTCCAGGGTTCGGATAAATCTGGAAATCGCA
TTTTCCGCCTCGTTGGAAAGTATTTTCCCGCTCCAGTTGTCGGTGGGGAG
CGATTGAAGAAGTATATATTTCACAAAATTTGCAGCGAGTTGCCGGATGG
GCCATTCTGCATTGTTTACATGCATACTTGTGTGCAAAAGGAGGACAACT
ATCCTGGCTTCACCATCTTGAGATGGATTTATGAAGAACTTCCCTCAAGA
ATTAAGAATAGGCTTCAAATCATGTACTTTATTCATCCTGGACTGTGGTC
AAGGCTAGCCTTTGCCACTGTTGGCCGATTCTTCTTAAGTGGAGGTTTGT
ATTGGAAAATCAAGTATGTTAGCCGTCTTCAGTATCTCTGGAATGACATA
AAGAAGGGGGAGATTGAGATCCCTGAATTTGTGCAAAATCATGATAATGT
TCTTGAGCACAGACCGCTGACAGATTATGGTATTGAACCAGATCATCTGC
ATTTACCTGAGGTGCCCAACATGGCATACTCATTTGGAAGGCATGACGGG
AACTGGGGATCGAGGGAATTTATGAGATAGTCCTGGTTTCGTGTAGGCAG
CTTCCCCAATTGATTTTAGATCAAAGTATTGTCGGTTGGGTTCAGTTGTG
GTGATGCAAATACAAGTGATGTACATAGTATTACTAATGTGGTCTTTCCT
GTGGTTTCTGTTTGTGAGCAGAACTTGTTTACT
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