CX043861

Overview
NameCX043861
Unique NameCX043861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:1065..1684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.850e-51
Identity = 99/110 (90.00%), Postives = 99/110 (90.00%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.850e-51
Identity = 99/110 (90.00%), Postives = 99/110 (90.00%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.850e-51
Identity = 99/110 (90.00%), Postives = 99/110 (90.00%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 98/110 (89.09%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAV TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 98/110 (89.09%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD MY KRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYTKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 98/110 (89.09%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAV TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 98/110 (89.09%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQF DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFADWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.463e-50
Identity = 97/110 (88.18%), Postives = 99/110 (90.00%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVA+IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD MYAKRAF+HWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVASIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.911e-50
Identity = 96/110 (87.27%), Postives = 99/110 (90.00%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST++AEVFSR+DHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX043861 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.259e-50
Identity = 97/110 (88.18%), Postives = 98/110 (89.09%), Query Frame = -1 
Query:  291 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDFMYAKRAFVHWYVXXXXXXXXXXEAREDLAALEKDY 620
            VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNSTSV EVFSRIDHKFD MYAKRAFVHWYV          EAREDLAALEKDY
Sbjct:  323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX043861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_PRUDU3.850e-5190.00Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA1_PEA3.850e-5190.00Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA1_ANEPH3.850e-5190.00Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA6_ARATH1.120e-5089.09Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA4_GOSHI1.120e-5089.09Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_ARATH1.120e-5089.09Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_GOSHI1.120e-5089.09Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_GOSHI1.463e-5088.18Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_CHLVU1.911e-5087.27Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]
TBA3_HORVU3.259e-5088.18Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_13H05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13H05-P9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043861 ID=CX043861; Name=CX043861; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGTAAATTGAAATAAGATAATCCAATCAAAATCA
AACAGTCAAAGATTACATGAACATATAGAACCCAGAAACTTGATAAGCAT
AACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGGTTT
TCATCACAAAATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATAT
TAAAACGCACAGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCAT
AATCTTCCTCACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTC
TCAAGGGCAGCAAGATCCTCACGAGCCTCAAAAAACTCTCCTTCTTCCAT
ACCCTCGCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAAAT
CAAACTTGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTG
GAGATCATGCAAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAAC
AACAGTTGGTGGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACC
AGTCGACGAATTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCA
TTGACATCCTTGGGCACAAC
back to top