CX043844

Overview
NameCX043844
Unique NameCX043844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12327 contig Csv1_Contig12327:120..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043844 vs. ExPASy Swiss-Prot
Match: PAP8_ARATH (Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.233e-72
Identity = 137/206 (66.50%), Postives = 164/206 (79.61%), Query Frame = -3 
Query:  253 SLPCK----RSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLXXXXXXXXXXXXXELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRR 858
            S+P K    RS R  L +V +VS  + +LRTGPDDL++++LSKV  SDGGV+L             ELQKYCV+ PVK PLIFG+W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL GKL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+RLGLGS+GSLFVF+RR
Sbjct:   34 SIPYKVLRSRSRRLGL-VVSSVSAPNVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRRR 238
The following BLAST results are available for this feature:
BLAST of CX043844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAP8_ARATH3.233e-7266.50Probable plastid-lipid-associated protein 8, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13G08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13G08-N15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043844 ID=CX043844; Name=CX043844; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTGATTAATGGCTTTTCTGCTGCTCGACGAGAATA
AGCATTAATTCAGGATTGCATGTTTCTATCATACAACAGTTGAGTTGTGA
TTACAGTGTACGATAGATACGGTATGGCGCTGAGGCATCAGTTTCTGCCT
AAATTTGCTATTCACGGGCATAGCTTGGCATTACAAAGAAGCATTCAGGA
TTTACAGAACACAAGCACAAACTTTAACTCTGTCCAGCTATGCTGCTTGT
GTGCGTCTCTGGAAAACAAATAGTGAACCTCTCGATCCTAACCCCAGCCT
GATCTTTTCATCTATGTATGTAATCTGCAACTTAACCTCACTCTGACCGC
CATATCGGAACTCCAATCCTCCAACTTTCAGTTCAGGTGGTTCAAATACA
ACTTGAATCCATTTCTCATCCAGAGCATTAAGCTTTCCTTTCAAAGAGAC
CTCTCCGTCAAGAAAACCCAGAGCGGTGAAGGAAACCTTGTTTCTAACAG
TGTCAGGAGCTTCAACAGCCTGAATCATTTCCTTTGTTTTGAAGAAAAGA
CGGCCAAATGCACTTCTGTAGCCACCCCCAGGTGAAGTTGGCACTGAACA
GTACACGACATCCCATTCTCCAAAGATTAGAGGGCATTTTACTGGTGCTT
CAACACAATATTTTTGCAACTCTTGAGCAACTTCAGCGACCTCTTTGTGT
TCTTCTTTGGCTAGTGAAACTCCTCCATCCGATTGGTTCACCTTGGAGAG
GATAGAAGCAACCAAATCGTCGGGACCGGTTCGCAGATCTGGGCTGGAGA
TGGAAACAGCCCTGACGATTTTCAGTGCGGTGCGAGGACTTCTTTTGCAA
GGAAGTGAAACTGAAAACTTGC
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