CX043836 | Citrus Genome Database

Overview


Name	CX043836
Unique Name	CX043836
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	677

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13133	contig	Csv1_Contig13133:67..742.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.039e-68
Identity = 123/147 (83.67%), Postives = 132/147 (89.80%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL++PNTFGNRIHRMLKLGLSI+E++GDADADMP LED   DAEGSKMEEVD
Sbjct:  553 KVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESGDADADMPALEDPEADAEGSKMEEVD 699

HSP 2 Score: 33.8834 bits (76), Expect = 5.039e-68
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FEGLCKV+KDVLGDK
Sbjct:  539 FEGLCKVMKDVLGDK 553

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.328e-65
Identity = 123/148 (83.11%), Postives = 133/148 (89.86%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSLD+PNTFG+RIHRMLKLGLSI ++DA +ADA+MPPLED A DAEGSKMEEVD
Sbjct:  553 KVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDDDAVEADAEMPPLEDDA-DAEGSKMEEVD 699

HSP 2 Score: 35.039 bits (79), Expect = 1.328e-65
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FEGLCKVIKDVLGDK
Sbjct:  539 FEGLCKVIKDVLGDK 553

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 3.841e-65
Identity = 122/148 (82.43%), Postives = 131/148 (88.51%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSI-EEDAGDADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD+SM GYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSLD+PNTFG+RIHRMLKLGLSI ++D  +ADADMPPLED A DAEGSKMEEVD
Sbjct:  553 KVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDDDVVEADADMPPLEDDA-DAEGSKMEEVD 699

HSP 2 Score: 35.039 bits (79), Expect = 3.841e-65
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FEGLCKVIKDVLGDK
Sbjct:  539 FEGLCKVIKDVLGDK 553

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 7.117e-64
Identity = 122/148 (82.43%), Postives = 128/148 (86.49%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IMEELRKRADADKNDKSVKD          LTSGFSLDDPNTFG+RIHRMLKLGLSI+ED   +AD DMPPLE   DDA  SKMEEVD
Sbjct:  555 KVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDETAEADTDMPPLE---DDAGESKMEEVD 699

HSP 2 Score: 33.4982 bits (75), Expect = 7.117e-64
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FEGLCKVIK+VLGDK
Sbjct:  541 FEGLCKVIKEVLGDK 555

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 7.117e-64
Identity = 122/148 (82.43%), Postives = 128/148 (86.49%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IMEELRKRADADKNDKSVKD          LTSGFSLDDPNTFG+RIHRMLKLGLSI+ED   +AD DMPPLE   DDA  SKMEEVD
Sbjct:  555 KVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEDETAEADTDMPPLE---DDAGESKMEEVD 699

HSP 2 Score: 33.4982 bits (75), Expect = 7.117e-64
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FEGLCKVIK+VLGDK
Sbjct:  541 FEGLCKVIKEVLGDK 555

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 1.578e-63
Identity = 121/148 (81.76%), Postives = 129/148 (87.16%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL+DPNTFG RIHRMLKLGLSI+ED + +ADADMPPLE   DDA  SKMEEVD
Sbjct:  555 KVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAEADADMPPLE---DDAGESKMEEVD 699

HSP 2 Score: 33.4982 bits (75), Expect = 1.578e-63
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FEGLCKVIK+VLGDK
Sbjct:  541 FEGLCKVIKEVLGDK 555

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.578e-63
Identity = 121/148 (81.76%), Postives = 129/148 (87.16%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRD+SMAGYMSSKKTMEINPEN IM+ELRKRADADKNDKSVKD          LTSGFSL+DPNTFG RIHRMLKLGLSI+ED + +ADADMPPLE   DDA  SKMEEVD
Sbjct:  555 KVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVMLLFETALLTSGFSLEDPNTFGTRIHRMLKLGLSIDEDESAEADADMPPLE---DDAGESKMEEVD 699

HSP 2 Score: 33.4982 bits (75), Expect = 1.578e-63
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FEGLCKVIK+VLGDK
Sbjct:  541 FEGLCKVIKEVLGDK 555

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.893e-60
Identity = 114/147 (77.55%), Postives = 124/147 (84.35%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDR+VDSPCCLVTGEYGWTANMERIMKAQALRD+SM+ YMSSKKTMEINP+N IMEELRKRA+ADKNDKSVKD          LTSGFSLDDPNTFG RIHRMLKLGLSI+E+    DADMP LE+ A   E SKMEEVD
Sbjct:  559 KVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGARIHRMLKLGLSIDEEEAGDDADMPALEEEA--GEESKMEEVD 703

HSP 2 Score: 31.9574 bits (71), Expect = 5.893e-60
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FE LCK+IKD+LGDK
Sbjct:  545 FENLCKIIKDILGDK 559

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.894e-59
Identity = 115/148 (77.70%), Postives = 126/148 (85.14%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEED-AGDADADMPPLEDAADDAEGSKMEEVD 633
            RVEKV+VSDR+VDSPCCLVTGEYGWTANMERIMKAQALRD+SM+ YMSSKKTMEINP+N IMEELRKRA+AD+NDKSVKD          LTSGFSLDDPNTF  RIHRMLKLGL+I+ED A D DADMP L++ A  AE SKMEEVD
Sbjct:  570 RVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSAYMSSKKTMEINPDNGIMEELRKRAEADRNDKSVKDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLNIDEDAAADEDADMPALDEGA--AEESKMEEVD 715

HSP 2 Score: 30.4166 bits (67), Expect = 2.894e-59
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FE LCKVIKD+LGD+
Sbjct:  556 FEELCKVIKDILGDR 570

[Close]

BLAST of CX043836 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.417e-58
Identity = 114/148 (77.03%), Postives = 125/148 (84.46%), Query Frame = -3

Query:  193 RVEKVLVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAG-DADADMPPLEDAADDAEGSKMEEVD 633
            +VEKV+VSDR+VDSPCCLVTGEYGWTANMERIMKAQALRD+SM+GYMSSKKTMEINP+N IMEELRKRA+ADKNDKSVKD          LTSGFSLD+PNTF  RIHRMLKLGLSI+ED   + D DMP LE+  D AE SKMEEVD
Sbjct:  555 KVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLYETALLTSGFSLDEPNTFAARIHRMLKLGLSIDEDENVEEDGDMPELEE--DAAEESKMEEVD 700

HSP 2 Score: 29.261 bits (64), Expect = 2.417e-58
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = -2

Query:  632 FEGLCKVIKDVLGDK 676
            FE LCK IK++LGDK
Sbjct:  541 FENLCKTIKEILGDK 555

The following BLAST results are available for this feature:

BLAST of CX043836 vs. ExPASy Swiss-Prot

BLAST of CX043836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74


Match Name	E-value	Identity	Description
HSP80_SOLLC	5.039e-68	83.67	Heat shock cognate protein 80 OS=Solanum lycopersi...	[more]
HSP82_ARATH	1.328e-65	83.11	Heat shock protein 81-2 OS=Arabidopsis thaliana GN...	[more]
HSP83_ARATH	3.841e-65	82.43	Heat shock protein 81-3 OS=Arabidopsis thaliana GN...	[more]
HSP81_ORYSJ	7.117e-64	82.43	Heat shock protein 81-1 OS=Oryza sativa subsp. jap...	[more]
HSP81_ORYSI	7.117e-64	82.43	Heat shock protein 81-1 OS=Oryza sativa subsp. ind...	[more]
HSP83_ORYSJ	1.578e-63	81.76	Heat shock protein 81-3 OS=Oryza sativa subsp. jap...	[more]
HSP82_ORYSJ	1.578e-63	81.76	Heat shock protein 81-2 OS=Oryza sativa subsp. jap...	[more]
HSP83_IPONI	5.893e-60	77.55	Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=...	[more]
HSP82_MAIZE	2.894e-59	77.70	Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV...	[more]
HSP81_ARATH	2.417e-58	77.03	Heat shock protein 81-1 OS=Arabidopsis thaliana GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_13G03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13G03-N5-1-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX043836 ID=CX043836; Name=CX043836; organism=Citrus sinensis; type=EST; length=677bp
TCTTCGGAAACTGCATACTTTTTAAGCATTTGCAAAACAATAAAACAAAA
CCTCCACCAAAGAGGGAAAATAAAAATATAAAAGCACTAATCCCACAGTA
CTACCACCACAGAACGCATAACAAAAAGAAACTACCTAGTTAAAAGAGTT
TCATGAAAAAAGACTAGTATATCAGACTATTATAGCTTCTTAATCAACTT
CCTCCATCTTGCTGCCCTCAGCATCGTCAGCAGCATCCTCCAATGGTGGC
ATGTCAGCATCAGCATCACCAGCATCCTCCTCGATGCTCAGCCCGAGTTT
CAACATCCTGTGGATTCTGTTGCCGAAAGTGTTAGGGTCATCAAGGCTGA
AACCAGAAGTGAGGAGAGCAGTCTCAAAGAGCAGAAGGACAAGGTCCTTC
ACAGACTTGTCATTCTTGTCCGCATCAGCCCTCTTCCTGAGCTCCTCCAT
GATGGGGTTCTCCGGATTGATCTCCATGGTCTTCTTGCTGGACATGTAAC
CAGCCATGCTGTTGTCTCTCAAGGCCTGAGCCTTCATGATCCTCTCCATG
TTGGCTGTCCATCCATACTCACCAGTCACCAAACAGCAGGGTGAGTCAAC
CACACGGTCAGATACCAAAACCTTCTCGACCCTTGTCACCCAAAACATCC
TTGATCACCTTGCAGAGACCCTCAAAT