CX043831

Overview
NameCX043831
Unique NameCX043831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043831_ssr208 microsatellite CX043831_ssr208:208..217. BLAST: Citrus ESTs to Prunus persica proteins V1
CX043831_ssr232 microsatellite CX043831_ssr232:232..241. BLAST: Citrus ESTs to Prunus persica proteins V1
CX043831_ssr336 microsatellite CX043831_ssr336:336..349. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: VILI3_ARATH (Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.232e-49
Identity = 91/107 (85.05%), Postives = 98/107 (91.59%), Query Frame = 3
Query:  465 MSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            MS S K LDPAFQG GQ+ GTEIWRIENF+PVP+PKSEHGKFYMGD YIVLQTT  KGGAYL+DIHFWIGKDTSQDEAGTAA+KTVELDA LGGRAVQ+RE+QGHES
Sbjct:    1 MSGSTKVLDPAFQGVGQKPGTEIWRIENFEPVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWIGKDTSQDEAGTAAVKTVELDAALGGRAVQYREIQGHES 107          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: VILI2_ARATH (Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 5.527e-49
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 3
Query:  474 SAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            S K LDPAFQGAGQ+ GTEIWRIENF+ VP+PKSEHGKFYMGD YIVLQTT  KGGAYL+DIHFWIGKDTSQDEAGTAA+KTVELDAVLGGRAVQHRE+QGHES
Sbjct:    2 STKVLDPAFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWIGKDTSQDEAGTAAVKTVELDAVLGGRAVQHREIQGHES 105          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: VILI4_ARATH (Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.612e-40
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 3
Query:  465 MSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            MS S + LDPAFQGAGQ+ G EIWRIENF P P+PKS  GKF+ GD YIVL+TT  K GA  +DIH+W+GKDTSQDEAGTAA+KTVELDA LGGRAVQ+RE+QGHE+
Sbjct:    1 MSVSMRDLDPAFQGAGQKAGIEIWRIENFIPTPIPKSSIGKFFTGDSYIVLKTTALKTGALRHDIHYWLGKDTSQDEAGTAAVKTVELDAALGGRAVQYREVQGHET 107          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: GELS_HOMAM (Gelsolin, cytoplasmic OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 3
Query:  492 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            PAF+GAG   G  IWRIENF+ VP PK ++G+FY GD YIVL T    G    +D+HFW+G +TSQDEAGTAAIKTVELD  LGG  VQHRE++GHE+
Sbjct:    3 PAFEGAGAVEGLTIWRIENFEVVPYPKEKYGQFYQGDSYIVLYTRDVNGNLS-WDLHFWLGSETSQDEAGTAAIKTVELDDQLGGVPVQHREVEGHET 99          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: GELS1_LUMTE (Gelsolin-like protein 1 OS=Lumbricus terrestris GN=AM PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  462 RMSTSAKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQT--TPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            ++   + + +PA++GAGQ+ G +IWRI NF+    P+++HGKFY GD YI+L T     K     YD+HFWIG  +SQDE GTAA KTVELD  L  + VQHRE+QG+ES
Sbjct:   28 QVKKDSAATEPAWKGAGQKEGLKIWRIVNFKVTEWPQNQHGKFYNGDSYIILNTYKPDPKSNELAYDVHFWIGSQSSQDEYGTAAYKTVELDTFLDDKPVQHREVQGYES 137          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: GELS_DROME (Gelsolin OS=Drosophila melanogaster GN=Gel PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  486 LDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYL-YDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            + P+F  AG+  G EIWRIENF+PV  PK+ +GKFY GD +IVL T   K    L +D+HFW+G +TS DEAG AAI TV+LD +L G  VQHRE+Q HES
Sbjct:   59 MHPSFANAGRTPGLEIWRIENFEPVIYPKTNYGKFYTGDSFIVLNTIENKKDKKLSWDVHFWLGLETSTDEAGAAAILTVQLDDLLNGGPVQHREVQDHES 159          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: GELS_CHICK (Gelsolin OS=Gallus gallus GN=GSN PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.913e-25
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 3
Query:  498 FQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            F  AG+  G +IWRIE F  VP+PK+ +G F+ GD Y+VL T   + G   YD+HFW+G ++SQDE G AAI TV++D  L G+AVQHRE+QGHES
Sbjct:   55 FSKAGKEPGLQIWRIEKFDLVPVPKNLYGDFFTGDSYLVLNTIRQRSGNLQYDLHFWLGDESSQDERGAAAIFTVQMDDYLQGKAVQHREVQGHES 150          

HSP 2 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  504 GAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTT--PGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHE 782
            G+G++   +IWRIE  + VP+  + +G+FY GD YI+L      GK G  +Y    W G  ++QDE  T+A  TV+LD  LGG  VQ R +QG E
Sbjct:  439 GSGKK---QIWRIEGSEKVPVDPATYGQFYGGDSYIILYDYRHAGKQGQIIYT---WQGAHSTQDEIATSAFLTVQLDEELGGSPVQKRVVQGKE 527          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: SEVE_DICDI (Severin OS=Dictyostelium discoideum GN=sevA PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 3
Query:  477 AKSLDPAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            A S +  ++G GQ  G +IWRIENF+ VP+P+S +GKFY GD YI+L T   +G +  +DIHF++G  T+QDEAGTAA KTVELD  LGG  +Q+R+ Q +ES
Sbjct:   29 AASTEAQWKGVGQAPGLKIWRIENFKVVPVPESSYGKFYDGDSYIILHTFK-EGNSLKHDIHFFLGTFTTQDEAGTAAYKTVELDDFLGGAPIQYRQCQSYES 130          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: GELS_HORSE (Gelsolin OS=Equus caballus GN=GSN PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  492 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            P F  AG+  G +IWR+E F  VP+P + +G F+ GD Y++L+T   + G   YD+H+W+G + SQDE+G AAI TV+LD  L GRAVQHRE+QG ES
Sbjct:    6 PEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFES 103          

HSP 2 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  504 GAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTP--GKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHE 782
            G GQ+   +IWR+E    VP+  + +G+FY GD YI+L       + G  +Y+   W G  ++QDE   +AI T +LD  LGG  VQ R +QG E
Sbjct:  392 GTGQK---QIWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHGSRQGQIIYN---WQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKE 480          
BLAST of CX043831 vs. ExPASy Swiss-Prot
Match: GELS_RAT (Gelsolin OS=Rattus norvegicus GN=Gsn PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.269e-25
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  492 PAFQGAGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHES 785
            P F  AG+  G +IWR+E F  VP+P + +G F+ GD Y++L+T   + G   YD+H+W+G + SQDE+G AAI TV+LD  L GRAVQHRE+QG ES
Sbjct:   55 PEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFES 152          
The following BLAST results are available for this feature:
BLAST of CX043831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
VILI3_ARATH4.232e-4985.05Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=1[more]
VILI2_ARATH5.527e-4987.50Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2[more]
VILI4_ARATH1.612e-4072.90Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1[more]
GELS_HOMAM2.852e-2963.27Gelsolin, cytoplasmic OS=Homarus americanus PE=1 S... [more]
GELS1_LUMTE7.766e-2751.82Gelsolin-like protein 1 OS=Lumbricus terrestris GN... [more]
GELS_DROME1.730e-2657.43Gelsolin OS=Drosophila melanogaster GN=Gel PE=1 SV... [more]
GELS_CHICK1.913e-2555.21Gelsolin OS=Gallus gallus GN=GSN PE=2 SV=1[more]
SEVE_DICDI5.566e-2554.37Severin OS=Dictyostelium discoideum GN=sevA PE=1 S... [more]
GELS_HORSE5.566e-2552.04Gelsolin OS=Equus caballus GN=GSN PE=1 SV=2[more]
GELS_RAT7.269e-2552.04Gelsolin OS=Rattus norvegicus GN=Gsn PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13F12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F12-L23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043831 ID=CX043831; Name=CX043831; organism=Citrus sinensis; type=EST; length=785bp
GCCGGTGCCATCGTCCCCGGATCTTTTCCTTAAATAACGACCTGCTCTGC
TGATGATAAGAAAATAACTCCACTCAATTTTTTATCTCTTTTTTACCCTC
TCTTCGTCTTCATCGTCATCACAATTCATTTCATTTTTCTCTCTCTATCT
CTTTCTGAATTACAATTTCTGAAAAGACCCCCAACGAATTAAAAAAAAAA
AAAAGTTAGAGAGAGAGCCCAGAACCCACAGCACACACACAACACAACCT
CCTCAATTATTCACTTTTCTTTCTCTTTTCCCCAGTATCTTTTATTTGCC
AGCTTTTCCTTTTTTCGTAATCCATCATCACTCTTCACACACACACACAT
TGAGATCCCTCTCTCTGTGTCTTTAAGTGAATATTACAGTTTCGAGGTAG
CAAAATCATCGAGTCTTTATTCTGTTTGTGATTATAATAACAGTAATAAA
GAAGGATTTTGAGGATGTCTACCTCTGCAAAATCTTTGGATCCTGCATTT
CAAGGAGCGGGTCAGAGAGTTGGTACTGAAATTTGGCGAATTGAGAATTT
TCAACCGGTTCCATTGCCTAAGTCTGAACATGGAAAATTCTATATGGGGG
ATTGCTACATCGTCTTGCAGACAACACCTGGCAAGGGAGGTGCTTATCTG
TATGACATACATTTCTGGATTGGAAAAGATACAAGTCAGGATGAAGCTGG
AACAGCAGCTATTAAAACTGTTGAACTTGATGCTGTTCTTGGAGGGCGTG
CAGTTCAGCACCGGGAACTTCAAGGCCATGAATCT
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