CX043818

Overview
NameCX043818
Unique NameCX043818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3603 contig Csv1_Contig3603:1..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043818 vs. ExPASy Swiss-Prot
Match: FBL91_ARATH (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.260e-37
Identity = 85/179 (47.49%), Postives = 110/179 (61.45%), Query Frame = -3 
Query:  301 YVGVTKRRKCSIG-SEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSA 834
            Y+GV KRRK SIG  EK +++++L FH + G D + L VDG GIKTGD FQ Y PD   A AA  + S  +RNLK               +  ++ EV+GGF F    RG+SFFG  N DS PF ENFP  P  GIFC GEIGR  +   G+E +E S   +R+LHVYS+ YL++SY++
Sbjct:  368 YLGVIKRRKYSIGLEEKPKIMSSLVFHQVNGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLK---------------SKPNKPEVVGGFAFVGSCRGDSFFGCPNADSSPFLENFPELPFGGIFCDGEIGRSLILEEGEEKKEVS--IQRFLHVYSSVYLIVSYTS 529
The following BLAST results are available for this feature:
BLAST of CX043818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBL91_ARATH3.260e-3747.49F-box/LRR-repeat protein At5g63520 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13F04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13F04-L7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043818 ID=CX043818; Name=CX043818; organism=Citrus sinensis; type=EST; length=854bp
CGGTTGGCTATATAGCAAGAAAAAGATGCCGATTATTTTGTAAGTCAAAA
TACTACACTGAAATAGTCAGAAAAGCAGCTTATCCAAAACAAAATAAGTC
GCAATGTCTTGTCTTCTAAATGTTGTCATATATGAACAAACCAAACTAGC
AGGATTTTCAGATTTCTTCATCAAAGCCAATTCATACACTGCTTGCTTCA
CACTTCGCGTATATTTATCTTCTGGGATAATTTCCACTCCCACCCTGTCC
AGAACAAGTTAGTTCATATTGTTACGGCGCACAAATCACTCCGAAGGTGC
TGCCGAGTATGAAATCACCAAATAAGCAGTGCTGTAGACATGCAGATAAC
GACGTTCAGCAGGACTTTCTTCTTGACTTTCTTGTCCGGTCATGCTTAAT
TTACCACGTCCAATTTCCCCGCCGCAAAATATTCCTGCTAACGGAGCACT
GGGAAAGTTCTCGAAGAATGGAAAACTATCGACATTGAGACCTCCGAAGA
ATGAGTTTCCACGGCCACAACAGGAGAAAATAAAACCTCCTAGAACTTCC
TTTCTGTCAATACTATTAGCAACATCCCTTCTGCCAAGGAAACCTTTGCC
ACTTGAGTTCAGCTTCAAATTTCTGATATTTTCAGATGCATTACGACAAG
CAGCTAGTGCAGCATTGTGATCTGGCTGGTAAAATTGGAAATAGTCACCA
GTTTTGATGCCGACACCATCAACATAAAGGTATTCCTGATCTCCTCCCCT
AATTCCATGGAAAGCCAATGTTGTTATAAGCCTTGACTTTTCAGAACCAA
TAGAGCATTTTCTTCGTTTTGTGACACCAACGTACAGTTCTACTTGAGGA
AAAC
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