CX043786

Overview
NameCX043786
Unique NameCX043786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043786_ssr163 microsatellite CX043786_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
CX043786_ssr36 microsatellite CX043786_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1880 contig Csv1_Contig1880:23..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.300e-58
Identity = 111/180 (61.67%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  287 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLTTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            MS VNL +W  T  + NQA+  RS       PF  L +L +S A ++  RP+S +SA+ T EE         P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKRVRP LCLAAC+LVGG++SMAMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++G
Sbjct:    1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFG 180          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.329e-49
Identity = 95/150 (63.33%), Postives = 119/150 (79.33%), Query Frame = 2
Query:  353 RSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            +S    P   +T  P+SL  +R     S S++ T E+N   + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES+AMPA C++EMIHTMSLIHDDLPCMDND LRRGKPTNH +YG
Sbjct:   24 QSRSRSPPSLITLKPISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYG 173          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.020e-46
Identity = 102/183 (55.74%), Postives = 125/183 (68.31%), Query Frame = 2
Query:  287 MSCVNLAAWT--------QTCSIFNQASSRRSNKTQPFRTLTTLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            M+ V L +W            SI  ++ SR    T       T P+S  S+R       +  S+V T E+N   S   +FDF SY+I KA  VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES AMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++G
Sbjct:    1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPIT------LTKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFG 177          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.710e-45
Identity = 98/185 (52.97%), Postives = 127/185 (68.65%), Query Frame = 2
Query:  278 LTKMSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLTTLPVS-------LASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            +  M+ V+L A  Q C +FNQ  S +S     F     +P+        L  +RP  P+++SA+ T +E+           F+FK Y+ +KA +VN+ALD A+ +K+P  IHE+MRYSLLAGGKRVRP+LCLAAC+LVGG++  AM AAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH IYG
Sbjct:    1 MRSMNLVDLWA-QQACLVFNQTLSYKS-----FNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYG 179          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.486e-45
Identity = 97/168 (57.74%), Postives = 124/168 (73.81%), Query Frame = 2
Query:  353 RSNKTQPFRTLTTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            RSN   P +    LP+S   S   R+P+      SISA+    QT EE+ + S          +FDFK+YMI KA++VN+AL+ AV +++P+KIHESMRYSLLAGGKRVRP+LC+AAC+L GG ES+AMP+AC++EMIHTMSL+HDDLPCMDND LRRGKPTNH ++G
Sbjct:    2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFG 167          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.434e-41
Identity = 79/152 (51.97%), Postives = 111/152 (73.03%), Query Frame = 2
Query:  341 ASSRRSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            A++RR  +       + +  ++ +++  R    S+++ + E      +FDFK YMI KA T+N+ALD A+ L +P+ IH++MRY++LAGGKRVRP+LCLAAC+LVGG E +A+ AAC++EMIHTMSLI DDLPCMDND LRRGKPT H ++G
Sbjct:   31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFG 182          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.818e-40
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = 2
Query:  326 SIFNQASSRRSNKTQPFRTLTTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            S+F Q+  RR N     ++L       P S  + +  R +     +  + N A    FDFK YMI+KA +VN ALD +V L++P+ + E++RYSLLAGGKRVRP+LC+A C+LVGG E+ AM AAC++EMIHT SLIHDDLPCMDN  LRRGKPTNH +YG
Sbjct:   11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYG 167          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.073e-39
Identity = 72/105 (68.57%), Postives = 91/105 (86.67%), Query Frame = 2
Query:  482 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            TF+F  YM+ KA +VN+AL+ A+ + +P+KIHE+MRY++LA GKRVRP+LCLA+C+LVGG E+ AMPAAC++EMIHTMSLI DDLPCMDND LRRGKPT H +YG
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYG 186          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.150e-33
Identity = 75/140 (53.57%), Postives = 99/140 (70.71%), Query Frame = 2
Query:  416 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            RPR  + +SA++ +  +        S   +F SYM  KA ++N+ALD +       V L +PV ++H++MRY+LL GGKRVRP+LCL AC+LVGG ES AMPAAC++EMIH  SLI DDLPCMD+D LRRGKPTNH ++G
Sbjct:    2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFG 141          
BLAST of CX043786 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.705e-33
Identity = 67/144 (46.53%), Postives = 96/144 (66.67%), Query Frame = 2
Query:  386 TTLPVSLASQRPRRP------VSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLA-GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            + +P+S     P +P      +S +A+++   +   S  FD ++Y     + +NQ LD A+ +K P  I+E+MRYS+LA G KR  PV+C+AAC+L GG    A P AC++EM+H  SLIHDDLPCMD+DP+RRGKP+NHT+YG
Sbjct:    6 SAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYG 149          
The following BLAST results are available for this feature:
BLAST of CX043786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GGPPS_HEVBR2.300e-5861.67Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL3.329e-4963.33Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH2.020e-4655.74Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CAPAN1.710e-4552.97Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO8.486e-4557.74Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH7.434e-4151.97Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH4.818e-4052.80Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP2_ARATH1.073e-3968.57Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH1.150e-3353.57Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
GGR_ARATH5.705e-3346.53Geranylgeranyl pyrophosphate synthase-related prot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13D07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D07-H13-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043786 ID=CX043786; Name=CX043786; organism=Citrus sinensis; type=EST; length=796bp
AATCCAAAGTTTTATCTTTGCCCGCTGTTGGTTGGCCTCCCTCCCTCCAC
CGTGCATTTGCGGTTGCCGCTAAATTTCCATCTTTGGTCTAAAGAAAAAA
AAAAGGAAAATGGCTTTGTTTGGTAACATGGTACAATTTGGGCATTTCTG
TTTATGAGTCTCGAAGAAGAAGAAGGAATCGGGAGGATAAAGTGGGAGAG
GCTTACGGCTTGCCTGCCCAGATTGCGTATTCTCGGTTGTCAGTTCTCGC
ACCAGTGTAATCTCCATTTCTTCTTGCCTTACCAAAATGAGTTGCGTCAA
TCTTGCGGCATGGACTCAAACATGCTCAATCTTTAACCAAGCTAGCAGTC
GCAGATCTAACAAAACTCAGCCGTTCCGTACGCTTACAACACTGCCCGTT
TCCTTGGCTTCACAGAGACCAAGGCGCCCCGTTTCGATCTCCGCAGTTCA
AACTCTCGAGGAAAACCCCGCCCCAAGCCCCACTTTCGATTTCAAGTCCT
ACATGATCCAAAAAGCAAGTACCGTCAACCAAGCCTTAGACGCCGCCGTT
TCGCTCAAGGACCCCGTGAAGATCCACGAATCCATGCGATACTCTTTACT
GGCGGGCGGCAAGCGGGTGCGCCCTGTGCTCTGCCTCGCCGCTTGTGACC
TCGTTGGTGGCCACGAGTCCATGGCCATGCCAGCTGCATGCTCTATCGAG
ATGATCCACACCATGTCCTTAATTCACGACGATTTGCCTTGCATGGATAA
CGACCCTCTACGTCGAGGGAAGCCCACGAACCACACGATCTACGGC
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