CX043775

Overview
NameCX043775
Unique NameCX043775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043775_ssr40 microsatellite CX043775_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3773 contig Csv1_Contig3773:778..1598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043775 vs. ExPASy Swiss-Prot
Match: AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.994e-61
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = -1 
Query:  273 ETMTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAPRAFKDLAPSSCQVVY 812
            E  T VE YDP++DTWT   KL M LA+YDSAV+G +M VTEGW WPFMF P G VYD ++ TW  MS GMKEGWTG+S+V+  +LFVISEHGD PMK Y  DDDTWRYV G+K   E M RPFAV G + +++VV+SG+NVA GRV E QNG  S EW+++++P++    +P+SC V+Y
Sbjct:  192 EATTEVESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQVYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPFAVTGADDRVFVVASGINVAEGRVSEGQNGDFSVEWRMVSSPKSSIQFSPASCHVLY 371
[Close]
BLAST of CX043775 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.079e-37
Identity = 70/179 (39.11%), Postives = 109/179 (60.89%), Query Frame = -1 
Query:  270 MTAVECYDPESDTWTTAAKLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKLFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAPRAFKDLAPSSCQVVYA 806
            +   E  +P    W   + +   +A YD+AV+  K+ VTEGW WPF  SPRG VYD   D W  MS G++EGWTG S+V+  +LF++SE     MK Y+P  D+W  + G + P E + RPFAVN    ++YVV   L++A+G +++ +N   +  W+V+ +P  + D+ PS+ Q+++A
Sbjct:  222 LDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETINGPELP-EQICRPFAVNCYGNRVYVVGRNLHLAVGNIWQSEN-KFAVRWEVVESPERYADITPSNSQILFA 398
The following BLAST results are available for this feature:
BLAST of CX043775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AFR_ARATH3.994e-6158.89F-box protein AFR OS=Arabidopsis thaliana GN=AFR P... [more]
FBK17_ARATH3.079e-3739.11F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13D01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13D01-H1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043775 ID=CX043775; Name=CX043775; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTATTTAATAGTAATGATTGATTAAAACTCCCAAACAAACAA
AATAGGAAGTAGGAACACACATTCTACCTACACAGCTGTGGCTGTCGCTT
ACAGATACGAAATCAAAAAGCAGGCAAACACTTTATGAAGTAAGCAGCCT
AATAGAAACAAAATCATGTCAAGGTTAGGCCGAGATTAGCAGATAAACTA
CAACCTGGCCTTATGATGAATGATTGGCGCAGCATTATTGGCTCAAAGAC
AAACACTTCAATTAGTTTAAGCGTAGACCACTTGGCAACTGGAGGGTGCT
AAGTCCTTGAACGCCCTAGGGGCAGTCATAACTTTCCACTCCGCTGAAAT
TCCCCCATTTTGTTCCTCATATACCCTTCCGATTGCCACGTTTAAACCAC
TTGACACCACATAAATTTTCCCTTCCACTCCATTCACTGCAAACGGCCTA
TGCATAACTTCACATGGGAATTTGTCCCCACCCACATACCGCCACGTGTC
GTCATCAGGGTTGTACTGCTTCATTGGACAGTCACCGTGCTCTGATATCA
CGAACAGCTTGCCTTCAAGCACGATACTGATCCCAGTCCATCCTTCCTTC
ATCCCATCGCTCATCAGATTCCACGTGTCCTTGTTGATGTCGTAGACCCC
ACCCCTTGGGGAAAACATAAAGGGCCACGTCCATCCCTCAGTCACATACA
TCTTGCTCCCCATCACAGCTGAGTCGTACCTAGCCAACCCCATTCGCAAC
TTGGCAGCCGTCGTCCACGTGTCGCTCTCCGGGTCGTAACACTCGACGGC
TGTCATTGTCTCGTTGATGTT
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