DC900340

Overview
NameDC900340
Unique NameDC900340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:18..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.147e-77
Identity = 112/135 (82.96%), Postives = 117/135 (86.67%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG G+SGKPLHYK SSFHRVIPGFMCQ            ESIYG+KFADENF+KKHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRT K VV+ DCGQLS
Sbjct:   38 ALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          

HSP 2 Score: 75.485 bits (184), Expect = 7.147e-77
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            MPNP+VFFDM+VGGQPAGRIVMELFAD TPRTAENFR
Sbjct:    1 MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.217e-74
Identity = 109/134 (81.34%), Postives = 116/134 (86.57%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGEKG+GK GKPLHYKGS+FHRVIPGFMCQ            ESIYG+KF DENFVKKHTGPGILSMANAGPGTNGSQFF+CTAKTEWL+GKHVVFGQVVEGMDV+K  E VGSSSGR +KPVVIADCGQL
Sbjct:   38 ALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          

HSP 2 Score: 69.707 bits (169), Expect = 3.217e-74
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NPKVFFD+T+GG PAGR+VMELFAD TP+TAENFR
Sbjct:    1 MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.109e-71
Identity = 103/135 (76.30%), Postives = 117/135 (86.67%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG+G+SGKPLHYKGS+FHRVIP FMCQ            ESIYG+KFADENF+K+HTGPGILSMANAG GTNGSQFF+CT KTEWLDGKHVVFG+V+EGM+VV+ IEKVGS SG+T++PV IADCGQLS
Sbjct:   38 ALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          

HSP 2 Score: 67.3958 bits (163), Expect = 1.109e-71
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NPKVFFDM + G PAGRIVMEL+AD TPRTAENFR
Sbjct:    1 MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.210e-70
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGE+GIGK GKPLHYKGSSFHRVIP FMCQ            ESIYGSKF DENF+KKHTGPGILSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVVEG++VV+ IEKVGS SGRT+KPVVIADCGQ+S
Sbjct:   39 ALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          

HSP 2 Score: 64.6994 bits (156), Expect = 1.210e-70
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 2
Query:   56 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            NPKV+FDMTVGG+ AGRIVMEL+AD TP TAENFR
Sbjct:    4 NPKVYFDMTVGGKSAGRIVMELYADTTPETAENFR 38          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.764e-70
Identity = 103/135 (76.30%), Postives = 115/135 (85.19%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG+G+SGKPLH+KGSSFHRVIP FMCQ            ESIYG+KF DENF +KHTGPGILSMANAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEK+GSSSG+  KPVVIADCG++S
Sbjct:   39 ALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          

HSP 2 Score: 63.1586 bits (152), Expect = 7.764e-70
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 2
Query:   56 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            +PKVFFDMT+GG PAG+IVMEL+ D TP+TAENFR
Sbjct:    4 HPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFR 38          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.013e-69
Identity = 104/135 (77.04%), Postives = 113/135 (83.70%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG+G +GKPLH+KGS FHRVIP FMCQ            ESIYGSKF DENF +KHTGPGILSMANAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEKVGSSSG+  KPVV+ADCGQLS
Sbjct:   38 ALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          

HSP 2 Score: 63.929 bits (154), Expect = 1.013e-69
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M  PKV+FDMT+ GQPAGRIVMEL+ D TPRTAENFR
Sbjct:    1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 2.050e-67
Identity = 104/134 (77.61%), Postives = 109/134 (81.34%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGE+GIGKSGKPLHYKGS+FHRVIP FMCQ            ESIYG KF DENFVKKHTGPGILSM NAG  TNGSQFF+CT KT WLDGKHVVFGQVVEGMDVV+ IEKVGS SGRT+K VV  DCGQL
Sbjct:   38 ALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          

HSP 2 Score: 61.2326 bits (147), Expect = 2.050e-67
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NPKV+FDMTVG + AGRIVMEL+AD  P TAENFR
Sbjct:    1 MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.486e-67
Identity = 102/135 (75.56%), Postives = 112/135 (82.96%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG+GK GKPLH+KGS FHRVIPGFMCQ            ESIYG+KF DENF+KKHTG GILSMAN+GP TNGSQFF+CT KT WLDGKHVVFGQVV+G+DVVKAIEKVGS SG+T+K V I DCGQLS
Sbjct:   38 ALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          

HSP 2 Score: 60.4622 bits (145), Expect = 3.486e-67
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP+VFFDM++ G P GRI MELFAD TP TAENFR
Sbjct:    1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.915e-66
Identity = 99/135 (73.33%), Postives = 108/135 (80.00%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 566
            ALCTGEKG+GKSGKPLHYKGS+FHRVIP FMCQ            ESIYG KF DE FV+K   PG+LSMANAGP TNGSQFF+CT  T WLDGKHVVFGQVVEGMDVVKAIEKVG+ +G T+K V +ADCGQLS
Sbjct:   38 ALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          

HSP 2 Score: 64.6994 bits (156), Expect = 2.915e-66
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NP+VFFDMTVGG PAGRIVMEL+A+  P+TAENFR
Sbjct:    1 MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFR 37          
BLAST of DC900340 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 8.369e-63
Identity = 94/134 (70.15%), Postives = 106/134 (79.10%), Query Frame = 3
Query:  162 ALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 563
            ALCTGE GIGK+GK LHYKGS+FHR+IPGFMCQ            ESIYGSKF DENF  KHTGPGILSMAN+GP TNGSQFF+CT KT WLDGKHVVFG+VV+G +VVKA+E VGS  G  ++ VVI DCG+L
Sbjct:   38 ALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          

HSP 2 Score: 62.003 bits (149), Expect = 8.369e-63
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 2
Query:   50 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFR 160
            M NPKVFFD+ +G   AGR+VMELFADVTPRTA NFR
Sbjct:    1 MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFR 37          
The following BLAST results are available for this feature:
BLAST of DC900340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
CYPH_CATRO7.147e-7782.96Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_SOLLC3.217e-7481.34Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_LUPLU1.109e-7176.30Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH1.210e-7078.52Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19B_ARATH7.764e-7076.30Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18C_ARATH1.013e-6977.04Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_BRANA2.050e-6777.61Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP18D_ARATH3.486e-6775.56Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_MAIZE2.915e-6673.33Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CP19C_ARATH8.369e-6370.15Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionDC900340 VSS Citrus sinensis cDNA clone VS28691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900340 ID=DC900340; Name=DC900340; organism=Citrus sinensis; type=EST; length=803bp
AGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAA
TGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCC
GGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGA
GAACTTCCGCGGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGC
AAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATT
CATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAAT
CAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACC
GGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATC
TCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACG
TTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAG
AAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGA
TTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCATCAC
GAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATTATGT
GGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTATGTTA
CTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACTGTTT
TTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGTCTTG
TTA
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