DC900316

Overview
NameDC900316
Unique NameDC900316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900316_ssr249 microsatellite DC900316_ssr249:249..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12239 contig Csv1_Contig12239:423..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 8.963e-43
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = -1
Query:  303 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 617
            + Y+  SPVI+WFWEVV+ FSKED AR LQFVTGTSKVPLEGF ALQGISG Q+ QIHKAYGS + LPSAHTCFNQLD PEY SK+ ++ERLLLAIHE NEGFGF
Sbjct: 3553 TSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGFGF 3657          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.529e-42
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = -1
Query:  303 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 617
            + Y+A SPVI WFWEVV+ FSKED AR LQFVTGTSKVPLEGF ALQGISG Q+ QIHKAYG+ + LPSAHTCFNQLD PEY SK+ L+ERLLLAIHE +EGFGF
Sbjct: 3576 TSYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASEGFGF 3680          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.532e-34
Identity = 63/104 (60.58%), Postives = 82/104 (78.85%), Query Frame = -1
Query:  303 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 614
            GY+ +SP +QWFW  V+ F +E++A+LLQF TGTSKVPL GF  L+G+SG Q+F IHK+YGS++ LP +HTCFNQLD PEY + + L   LL AI+EG+EGFGF
Sbjct: 3123 GYNVSSPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDTYEQLRSMLLTAINEGSEGFGF 3226          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 4.614e-31
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = -1
Query:  303 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 611
            YSA +P IQWFW  V+ F KE+ A+LLQFVTGTSKVPL GF  L+G++G  +F IH+ YGS D LPS+HTCFNQLD PEY + + L  +LL AI  G++ FGF
Sbjct: 3923 YSAGAPQIQWFWRAVRSFDKEELAKLLQFVTGTSKVPLNGFKELEGMNGVSRFNIHRDYGSKDRLPSSHTCFNQLDLPEYENYETLRSQLLKAITAGSDYFGF 4025          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.342e-30
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+     I +FW  V+ F KE++A+LLQFVTGTSKVPL GF  L G++G  KF IH+ YGSID LPS+HTCFNQLD P Y S + L   LLLAI+EG+EGFG
Sbjct: 3155 YTPTCKQINYFWRAVRSFDKEERAKLLQFVTGTSKVPLNGFKELSGVNGISKFSIHRDYGSIDRLPSSHTCFNQLDLPAYDSYETLRGSLLLAINEGHEGFG 3256          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLD P Y S + L   LLLAI E +EGFG
Sbjct:  219 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 320          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLD P Y S + L   LLLAI E +EGFG
Sbjct: 4274 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4375          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y + S  IQWFW  ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+   S D LPSAHTCFNQLD P Y S + L   LLLAI E +EGFG
Sbjct: 4271 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4372          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+A    + +FW  V+ F  E++A+LLQFVTGTSKVPL GF  L G++G  KF IH+ +GS + LPS+HTCFNQL+ P Y S + L   LLLAI+EG+EGFG
Sbjct: 3165 YTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFG 3266          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.814e-27
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y A  PVI+WFWE++ G+  ED+++LLQF TGTS++P+ GF  LQG  G +KF I KA G+ D LP AHTCFN+LD P+YPSK  L E+L LA+ E   GFG
Sbjct:  685 YIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKA-GTPDQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAV-ENTVGFG 784          
The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
UPL2_ARATH8.963e-4377.14E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH1.529e-4277.14E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
PTR1_SCHPO1.532e-3460.58E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharo... [more]
TOM1_NEUCR4.614e-3160.19E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
TOM1_ASHGO1.342e-3060.78Probable E3 ubiquitin-protein ligase TOM1 OS=Ashby... [more]
HUWE1_RAT8.702e-3060.78E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
HUWE1_MOUSE8.702e-3060.78E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN8.702e-3060.78E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
TOM1_YEAST8.144e-2855.88E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]
PUB3_SCHPO1.814e-2756.86E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionDC900316 VSS Citrus sinensis cDNA clone VS28665 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bp
AAGAAACAATTGATTTGATTATCCAGAAATTTTATTTTTCTTGGACAAGG
ATGGCATAAATCACCAAATGTTGAAATCAAAAAGGGAAAAAGAATTTGCA
AAAATAAAGGGCAGATTGGCAAATTTTAAAACTGCCATGATAATTTTCAA
TAGCCAATATATGCTGTACAGTATATAAACATGTTTTGACTTGAAATGTG
ACATCCACCCTTTTACCCATTTCCTCTCCCATTGCAGCTTTTGAGATAAT
ATATATATTTTTATCTACACTACTCTGGAGAAATAGCCAATTTTACTTAA
CCAAATCCAAACCCTTCATTGCCTTCATGAATTGCAAGCAGCAGTCTCTC
CTCTAGATGCTGCTTAGAAGGATATTCCGGCCAATCTAATTGATTGAAAC
AAGTATGAGCAGAAGGCAAATGATCTATGCTGCCATATGCCTTGTGTATT
TGAAACTTCTGTGAACCTGAAATTCCTTGAAGTGCACTGAAACCTTCCAA
GGGCACCTTTGAGGTGCCAGTCACAAACTGCAGAAGACGAGCCTTATCCT
CCTTGCTGAACCCTTGAACAACCTCCCAAAACCACTGGATAACAGGAGAT
GCAGCACTATATCCAGATATTCCGGATTTGCC
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