CX043647

Overview
NameCX043647
Unique NameCX043647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043647_ssr208 microsatellite CX043647_ssr208:208..219. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 2.113e-89
Identity = 159/207 (76.81%), Postives = 175/207 (84.54%), Query Frame = -3
Query:  224 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGRVWKTHWFWSRYVGEDDFVPGGNVEMHKGSNATKNV 844
            GSDA+LMSAVITG+VNV ATMVSIYGVDKWGRRFLFLEGGVQMLICQA+VAACIGAKFG+DG PG+LP+WYA+VVVLFICIYV+GFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNM FTF+VAQVFL MLCHLK                 VY+FLPETKGIPIEEMG+VWK HW+WSRYV ++D+ P G +EM K     KNV
Sbjct:  318 GSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPETKGIPIEEMGQVWKQHWYWSRYVVDEDY-PNGGLEMGKEGRIPKNV 523          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 4.124e-85
Identity = 152/208 (73.08%), Postives = 172/208 (82.69%), Query Frame = -3
Query:  224 SDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGRVWKTHWFWSRYVGEDDFVPGGNVEMHKGSN--ATKNV 841
            +DASLMSAV+TG VNV AT+VSIYGVD+WGRRFLFLEGG QMLICQAVVAACIGAKFG+DG PGELPKWYAIVVV FICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQS+ VSVNM+FTF++AQ+FL MLCHLK                 VY FLPETKGIPIEEMG+VW++HW+WSR+V + ++  G  +EM K SN   TK+V
Sbjct:  317 TDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSHWYWSRFVEDGEY--GNALEMGKNSNQAGTKHV 522          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.739e-78
Identity = 138/184 (75.00%), Postives = 154/184 (83.70%), Query Frame = -3
Query:  293 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGRVWKTHWFWSRYV 844
            GSDA+L+SAV+TG+VNV AT+VSIYGVDKWGRRFLFLEGG QMLI Q  VAA IGAKFG+DG PG LPKWYAIVVVLFICIYVA FAWSWGPLGWLVPSEIFPLEIRSAAQS+ VSVNM+FTFL+AQVFL MLCHLK                 VY FLPET+G+PIEEM RVW++HW+WS++V
Sbjct:  314 GSDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGGFQMLISQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFICIYVAAFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIFVYLFLPETRGVPIEEMNRVWRSHWYWSKFV 497          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.629e-65
Identity = 118/192 (61.46%), Postives = 141/192 (73.44%), Query Frame = -3
Query:  269 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGRVWKTHWFWSRYVGEDDFVPG 844
            G DA+LMSAVITG+VN+++T VSIY VD++GRR LFLEGG+QM ICQ +V + IGA+FG  G  G L    A  ++ FIC+YVAGFAWSWGPLGWLVPSEI PLEIR A Q++NVSVNM FTFL+ Q FL MLCH+K                 +YF LPETKG+PIEEMGRVWK HWFW +Y+ ED  + G
Sbjct:  317 GDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGT-GTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHWFWKKYIPEDAIIGG 507          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 9.885e-63
Identity = 118/191 (61.78%), Postives = 139/191 (72.77%), Query Frame = -3
Query:  266 DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGRVWKTHWFWSRYVGEDDFVPGG 838
            DASL+SAVITG VNVV+T+VSIY VD++GRR LFLEGG+QM++ Q VV   IG KFG  G+ G L    A  ++ FIC+YVAGFAWSWGPLGWLVPSEI PLEIR A Q++NVSVNM FTFL+ Q FL MLCH+K                 +YF LPETKG+PIEEMGRVWK H FW RY+ +D  + GG
Sbjct:  320 DASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGS-GTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHPFWKRYMPDDAVIGGG 509          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.427e-61
Identity = 115/201 (57.21%), Postives = 144/201 (71.64%), Query Frame = -3
Query:  242 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGRVWKTHWFWSRYVGEDDFVPGGNVEMHKGS 844
            GS ASL+SA++TGI+ ++ T VS++ VD++GRR LFL+GG+QML+ Q  + A IG KFG+ G  G + K  A ++V  ICIYVAGFAWSWGPLGWLVPSEI PLEIRSAAQ++NVSVNM FTFLVAQ+FL MLCH+K                 +Y  LPETK +PIEEM RVWK HWFW +++  D+ V  G  EM + S
Sbjct:  315 GSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVKFGVAGT-GNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEMNRVWKAHWFWGKFI-PDEAVNMGAAEMQQKS 513          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.208e-60
Identity = 113/188 (60.11%), Postives = 137/188 (72.87%), Query Frame = -3
Query:  281 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGRVWKTHWFWSRYVGEDD 844
            G+DASL+SAVITG+VNV++T+VSIY VDK+GRR LFL+GG QM++ Q  V + IG KFG +G  G L    A +++  IC+YVAGFAWSWGPLGWLVPSEI PLEIRSA QS+NVSVNM FTF + Q FL MLCH+K                 +YF LPETKG+PIEEMG+VWK H +W +Y   DD
Sbjct:  318 GNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNGE-GNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEMGKVWKEHRYWGKYSNNDD 504          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 8.961e-56
Identity = 113/196 (57.65%), Postives = 133/196 (67.86%), Query Frame = -3
Query:  269 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEM-GRVWKTHWFWSRYV---GEDDFVPG 844
            GSDASL SAV+TG VNV++T+VSIY VDK GRR L LE GVQM   Q V+A  +G K  +      L K +AI+VV+ IC YVA FAWSWGPLGWL+PSE FPLE RSA QSV V VN+LFTF++AQ FL+MLCH K                 V F LPETK IPIEEM  RVWK HWFW+R++    + +FV G
Sbjct:  317 GSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVK--VTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHWFWARFMDDHNDHEFVNG 510          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP6_ARATH (Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.582e-52
Identity = 101/189 (53.44%), Postives = 129/189 (68.25%), Query Frame = -3
Query:  281 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGR-VWKTHWFWSRYVGEDD 844
            GSDA+L+SAVITG +NV+AT V IY VD+ GRRFL L+  V MLICQ ++   +    G+ G  G  P+  A+VVV+F+C+YV GFAWSWGPLGWL+PSE FPLE RSA  +V VS NM FTF++AQ FL+MLC ++                  +FF+PETKGI I++M   VWK HWFW RY+  +D
Sbjct:  312 GSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLIIGIILAKDLGVTGTLGR-PQ--ALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAVAVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKPHWFWKRYMLPED 497          
BLAST of CX043647 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.524e-52
Identity = 96/182 (52.75%), Postives = 125/182 (68.68%), Query Frame = -3
Query:  299 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEGGVQMLICQAVVAACIGAKFGIDGNPGELPKWYAIVVVLFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFLVAQVFLNMLCHLKXXXXXXXXXXXXXXXXXVYFFLPETKGIPIEEMGRVWKTHWFWSR 844
            G +ASL S+ +TG V V++T +SI  VD+ GRR L + GG+QM+ICQ +VA  +G KFG   +  EL K Y+++VV+FIC++V  F WSWGPLGW +PSEIFPLE RSA QS+ V+VN+LFTF++AQ FL +LC  K                 VYF LPETKG+PIEEM  +W  HWFW +
Sbjct:  318 GGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFG---DNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFWKK 496          
The following BLAST results are available for this feature:
BLAST of CX043647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
STC_RICCO2.113e-8976.81Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
STP1_ARATH4.124e-8573.08Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STP12_ARATH3.739e-7875.00Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
STP10_ARATH1.629e-6561.46Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
STP9_ARATH9.885e-6361.78Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STP4_ARATH1.427e-6157.21Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
STP11_ARATH1.208e-6060.11Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STP13_ARATH8.961e-5657.65Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP6_ARATH1.582e-5253.44Sugar transport protein 6 OS=Arabidopsis thaliana ... [more]
STP7_ARATH3.524e-5252.75Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12E09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12E09-I18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043647 ID=CX043647; Name=CX043647; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTTTGAAGATAACATGAATTATTTGTACTACGTAATT
GACATTAATAAGCTGCTGGTAGAGTTTTACATAGAATTCACTTCTGTATT
GAGATGATAAAATTAGGAACCAAAGTTCAAGAACCTTGGCGTTTAGAAAC
CAATAGTATTTACTGTTACGAAGTAGAAAAATGAAAAACGGAAAATAAAT
TCTGGACTTGTTGTTGTTGATCACACATTCTTGGTAGCATTGCTTCCTTT
GTGCATTTCCACGTTTCCACCGGGGACAAAATCATCTTCACCGACATAAC
GAGACCAGAACCAATGAGTCTTCCACACTCTACCCATTTCTTCAATCGGA
ATTCCCTTGGTCTCCGGCAAGAAGAAGTAGACGAAGAATGACATCACCAG
CACGAAGAACGCGAAGAAAAGGAACAAGCCAAACTTGAGATGGCACAGCA
TGTTCAAGAACACTTGCGCAACCAAGAATGTGAACAACATGTTGACAGAA
ACATTCACACTCTGTGCCGCTGATCGTATTTCGAGTGGGAAGATTTCACT
AGGCACCAACCATCCAAGAGGACCCCAGGACCAGGCAAATCCAGCAACGT
ATATGCAGATGAAAAGCACTACAACAATTGCATACCACTTCGGCAGCTCC
CCAGGATTCCCATCAATTCCAAATTTAGCACCAATGCAAGCAGCAACAAC
AGCCTGGCATATTAACATTTGAACACCACCTTCGAGGAAAAGAAACCTTC
GTCCCCACTTATCAACACCATATATTGATACCATGGTCGCAACAACATTG
ACAATACCAGTGATCACGGCAGACATGAGTGAAGCATCACTACCGA
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