CX043646

Overview
NameCX043646
Unique NameCX043646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043646 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.399e-43
Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 3
Query:  120 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 695
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of CX043646 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.399e-43
Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 3
Query:  120 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 695
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of CX043646 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.399e-43
Identity = 86/191 (45.03%), Postives = 129/191 (67.54%), Query Frame = 3
Query:  123 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 695
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  I+++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of CX043646 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 8.371e-42
Identity = 86/194 (44.33%), Postives = 128/194 (65.98%), Query Frame = 3
Query:  123 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 704
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W   NE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + + E  K K
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTK-FSQEENTENMKLK 225          
BLAST of CX043646 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.746e-39
Identity = 85/203 (41.87%), Postives = 129/203 (63.55%), Query Frame = 3
Query:  102 SPAIIKSKMEGK-----GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 695
            SP   KS  E +     G L   ++ LL TEKQ R + D   T K   EI++LC+EA     +NE++V LSK+RGQL+            Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M K EKI F ++Q+R+C++ +D++RAQ++  K++ +    D +++ K
Sbjct:   22 SPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLK 224          
BLAST of CX043646 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33
Identity = 80/190 (42.11%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  135 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 698
            + +  + +DQLL  EK+ R + D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK            Y+  +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + DY +A +LSRKI  + F  +P  E  K
Sbjct:   29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF-KNPKYESLK 217          
BLAST of CX043646 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.164e-33
Identity = 78/185 (42.16%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  141 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 695
            +++A +++LL  EKQ+R + D +   K +  I  L F A D++ LNEQ+V+L KK GQLK            Y+    DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I  A +++    VET+G+    EK+AFIL+QVRL L R DY  A   ++KI+ + F+ +  +  K
Sbjct:   27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLK 211          
The following BLAST results are available for this feature:
BLAST of CX043646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_PONAB3.399e-4344.2726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN3.399e-4344.2726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN3.399e-4345.0326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE8.371e-4244.3326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI1.746e-3941.8726S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_YEAST3.189e-3342.1126S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
RPN5_SCHPO4.164e-3342.1626S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12E08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12E08-I16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043646 ID=CX043646; Name=CX043646; organism=Citrus sinensis; type=EST; length=776bp
TTTCCTTTCTTTTCAATTCTTCACCGAATCAGAATCCCTCTCTGAACTCA
CTCTCTGAAAATTAGGGTTTTTTCCCCCTTATTTAACAATTTTGGGCATA
ATCTCCGGCGATTATCAAATCGAAGATGGAGGGTAAAGGCAATTTGGAGG
CGCAAGTAGATCAGCTTTTGAATACCGAGAAGCAGATGAGATTATCCGGT
GACGTGGCCGGCACCAAGAAGGCGGTGACGGAAATTTTGCAGCTTTGCTT
TGAAGCTAAAGACTGGAAGACTCTCAATGAACAGATTGTTAATCTTTCCA
AGAAACGCGGTCAACTCAAGCAGGCTGTAACTGCAATGGTCCAGCAAGCA
ATGCAGTACATCGATCAGACGCCAGATCTTGATACTCGTATAGAGCTCAT
CAAAACACTAAATAGTGTCTCTGCAGGGAAGATATATGTTGAAATTGAGA
GGGCAAGGTTGATTAAAAAACTTGCAAAGATTAAGGAAGAACAAGGGCTT
ATAGCGGAAGCTGCAGATCTGATGCAAGAAGTGGCTGTGGAGACATTTGG
TGCTATGGCAAAAACTGAGAAAATCGCCTTCATTCTTGAACAAGTCCGTC
TGTGCCTAGACCGCCAAGATTATGTCCGTGCACAAATTCTTTCAAGGAAG
ATTAGTCCAAGAGTTTTTGATGCTGATCCTTCGAAAGAAAAGAAAAAGCC
AAAAGAAGGTGACAATGTTGTTGAAGAGGCTCCTGCTGATATACCATCAT
TATTGGAATTGAAAAGAATCTATTAT
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