CX043645

Overview
NameCX043645
Unique NameCX043645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2400 contig Csv1_Contig2400:1048..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043645 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  403 WNTY----KDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHK 783
            W+T+    K E +++T          A EDLR+R+IEHNI V+S YY +I+  RLAELL LS+ E+EK +SD+V +K + AKIDRP GI  F    D N +LN+WA N+  LLDLVEK+ H + +E M+HK
Sbjct:  318 WSTFFELNKPELDSQTVF---KTEPNAWEDLRKRVIEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTNHLVQREFMLHK 445          
BLAST of CX043645 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 54/107 (50.47%), Postives = 79/107 (73.83%), Query Frame = -1
Query:  406 GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 726
            G K  +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+ E+E  LS++VV+K + AK+DR  GI+ FQ  KD N++LN W+  L  L+ LV K+ H I KE M+H
Sbjct:  347 GEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453          
BLAST of CX043645 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 54/107 (50.47%), Postives = 79/107 (73.83%), Query Frame = -1
Query:  406 GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 726
            G K  +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+ E+E  LS++VV+K + AK+DR  GI+ FQ  KD N++LN W+  L  L+ LV K+ H I KE M+H
Sbjct:  347 GEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453          
BLAST of CX043645 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 54/107 (50.47%), Postives = 79/107 (73.83%), Query Frame = -1
Query:  406 GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 726
            G K  +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+ E+E  LS++VV+K + AK+DR  GI+ FQ  KD N++LN W+  L  L+ LV K+ H I KE M+H
Sbjct:  347 GEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453          
BLAST of CX043645 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 8.587e-26
Identity = 53/107 (49.53%), Postives = 79/107 (73.83%), Query Frame = -1
Query:  406 GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 726
            G K  +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+ E+E  LS++VV+K + AK+DR  G++ FQ  KD N++LN W+  L  L+ LV K+ H I KE M+H
Sbjct:  347 GEKRWKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453          
BLAST of CX043645 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.676e-21
Identity = 52/124 (41.94%), Postives = 80/124 (64.52%), Query Frame = -1
Query:  406 TYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 777
            TY+     +    GG       EDL++R+IEHN+ V+S+YYSRITL RL ELL L+  + E ++SD+V    + AK++RP  IV F+  K+S+ +LN W+ N+++LL+ +E   H I KE ++H
Sbjct:  317 TYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440          
BLAST of CX043645 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  406 GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 726
            G K   +LR+R+IEHNI VV+ YYSRI   RL  LL +S  E E+ L D++      AKIDRP  ++ F+ +++  + LN W  N+ +LL  +EK    I KE M++
Sbjct:  329 GEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMN 435          
The following BLAST results are available for this feature:
BLAST of CX043645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_DICDI1.565e-2748.8526S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_PONAB6.575e-2650.4726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN6.575e-2650.4726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN6.575e-2650.4726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE8.587e-2649.5326S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_YEAST1.676e-2141.9426S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
RPN5_SCHPO2.769e-1642.0626S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12E08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12E08-I16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043645 ID=CX043645; Name=CX043645; organism=Citrus sinensis; type=EST; length=783bp
TTTTTTTTTTTTTTTTTCAACTCAAATCATAGGGTTAAAATAATAGTAAA
TTCTTCATAGCACAGAATAGTTTAGGAAATTATGAAAAAGACCAAAATCA
CATAATCCAAGCCAAAGAAAATAAAGAACAAGTGAAGCATTCAATTTCTT
TCCCCTGCTATGAAACAAGACCAATGAGGTTTATGCTCTAGACAGCGGCA
AAGGTACGTACCGATAGTATACAACAATCTTTTGAGTTCTAGAAAGCAAA
AGCAAGGTCTATATCTCCTAAACCTACCAACAAAAGAACTGTGATAGATT
GCATGCTTGATCAACCCAGTCGTAGTTGAATACACGTTGATTAAGATCAC
AATTGAAACCTGCAGATTGGAGGCGACATTGATTTCATACTTTCAAAGCA
GTTTTGTGAACCATAGTTTCTTTGTGAATTTGATGGCAACTCTTCTCAAC
AAGATCAAGCAGCTTCTCCAAGTTCATTGCCCATGAATTGAGAATGTCAT
TGCTATCCTTGGCTACCTGGAAACAGACTATTCCCTGCGGCCTGTCAATT
TTAGCTACCAGTGCCTTGGAAACAACCATGTCTGAAAGGTGCTTCTCTGC
TTCCTGGATACTCAGACACAATAGCTCTGCCAGTCTCTTCAATGTAATCC
TTGAGTAATACTTAGAGACGACCAGAATATTATGTTCAATTATTCTCTGT
CTTAGATCCTCTGCAGCTTTGGCACCCAAAGAGCCTCCAAGCATGTTAGT
TTCATTTTCAAACTCATCCTTGTATGTATTCCA
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