CX043629

Overview
NameCX043629
Unique NameCX043629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.618e-76
Identity = 136/162 (83.95%), Postives = 152/162 (93.83%), Query Frame = 2
Query:  374 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQEPRAYAPLTIVCDGCFSNLRRSLCKPKVDV 859
            LA+TL  DGRRVHVIERD+TE DRIVGELLQPGGYLKL+ELGLEDCV EIDAQ+V GYAL+ DGK+TRLSYPLEKFH+DV+GRSFHNGRF+QRMREKAASLPNVR+EQGTVTSL+E+ G++KGVQYKTKDGQE  A+APLTIVCDGCFSNLRRSLC PKV+V
Sbjct:   89 LAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKAASLPNVRMEQGTVTSLVEKKGSVKGVQYKTKDGQELSAFAPLTIVCDGCFSNLRRSLCNPKVEV 250          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.474e-53
Identity = 102/157 (64.97%), Postives = 124/157 (78.98%), Query Frame = 2
Query:  374 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEK--FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQEPRAYAPLTIVCDGCFSNLRRSL 838
            LA+ L KDGRRVHVIERD+ EP+RI+GE +QPGG L L +LGLEDC+E IDAQ+  G  ++KDGK    S+P++   F  D S RSFHNGRF+QR+R+KA+SLPNVRLE+GTV SL+EE G IKGV YK   G+E  A APLT+VCDGC+SNLRRSL
Sbjct:   60 LAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSL 216          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.315e-53
Identity = 100/156 (64.10%), Postives = 124/156 (79.49%), Query Frame = 2
Query:  374 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLE-KFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQEPRAYAPLTIVCDGCFSNLRRSL 838
            LA+ L KDGRRVHVIERD+ EP R++GE +QPGG L L +LGL+DC+EEIDAQ+  G  LFKDGK T   +P++  F  + SGR FHNGRF+QR+R+KA+SLPNVRLE+GTV SL+EE G +KGV YK   G+E  ++APLT+VCDGC SNLRRSL
Sbjct:   63 LAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCLEEIDAQKSTGIRLFKDGKETVACFPVDTNFPYEPSGRFFHNGRFVQRLRQKASSLPNVRLEEGTVRSLIEEKGVVKGVTYKNSSGEETTSFAPLTVVCDGCHSNLRRSL 218          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.631e-52
Identity = 98/157 (62.42%), Postives = 124/157 (78.98%), Query Frame = 2
Query:  374 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEK--FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQEPRAYAPLTIVCDGCFSNLRRSL 838
            LA+ L KDGRRVHVIERD+ EP+R++GE +QPGG L L +LGL+DC+E+IDAQ+  G A++KDGK     +P++   F  + S RSFHNGRF+Q++R KA SL NVRLE+GTV SLLEE G +KGV YK K+G+E  A APLT+VCDGC+SNLRRSL
Sbjct:   60 LAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCLEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRKAFSLSNVRLEEGTVKSLLEEKGVVKGVTYKNKEGEETTALAPLTVVCDGCYSNLRRSL 216          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.203e-49
Identity = 108/225 (48.00%), Postives = 141/225 (62.67%), Query Frame = 2
Query:  176 HYIAGTLIXXXXXXXXXXXXNDSKKPRKV---STTYKTQNDVFRSSVNAGKNGSPTDXXXXXXXXXXXXLAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEK-FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQEPRAYAPLTIVCDGCFSNLRRSL 838
            H    TL+            N  KK  K+   +T  +   D     V AG  GS               LA+ L KDGRRVHVIERD+ EP R++GE +QPGG L L +LGLEDC+E ID Q   G A++KDG+   +S+P +  F  + +GR+F+NGRF+QR+R+KA+SLP V+LE+GTV SL+EE G IKGV YK   G+E  A+APLT+VCDGC+SNLRRS+
Sbjct:    7 HVCLWTLLAFVLTWTVFYVNNRRKKVAKLPDAATEVRRDGDADVIIVGAGVGGSA--------------LAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAVYKDGQKALVSFPEDNDFPYEPTGRAFYNGRFVQRLRQKASSLPTVQLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAFAPLTVVCDGCYSNLRRSV 217          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.865e-48
Identity = 94/156 (60.26%), Postives = 118/156 (75.64%), Query Frame = 2
Query:  374 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEK-FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQEPRAYAPLTIVCDGCFSNLRRSL 838
            LA+ L KDGRRVHVIERD+ EP R +GEL+Q GG   L +LGLEDC+E+IDAQ+    A++KDGK   L +P +K F  +  GR   NGR +QR+R+KAASL NV+LE+GTV SL+EE G +KGV YK   G+E  A+APLT+VCDGC+SNLRRSL
Sbjct:   58 LAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQKAASLSNVQLEEGTVKSLIEEEGVVKGVTYKNSAGEEITAFAPLTVVCDGCYSNLRRSL 213          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.138e-36
Identity = 93/201 (46.27%), Postives = 120/201 (59.70%), Query Frame = 2
Query:  266 TTYKTQNDVFRSSVNAGKNGSPTDXXXXXXXXXXXXLAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALF-KDGKS-TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKD-GQEPRAYAPLTIVCDGCFSNLRRSLCKPKVDV 859
            T+  +QND     V AG  GS               L   L +DGR+V VIERD+ EPDRIVGE LQPGGY  L +LGL D VE +DAQ V GY +  ++ KS  ++ YPL + +   SGR+FH+GRFI  +R+ A + PN +  +G V  LLEE+  + GVQYK K+ G     +APLT+V DG FS  R+SL   KV V
Sbjct:  116 TSTSSQNDPEVIIVGAGVLGSA--------------LVAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAEPNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 302          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.793e-36
Identity = 82/165 (49.70%), Postives = 108/165 (65.45%), Query Frame = 2
Query:  374 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYAL--FKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKD-GQEPRAYAPLTIVCDGCFSNLRRSLCKPKVDV 859
            LA  L +DGR+V VIERD+ EPDRIVGELLQPGGY  L ELGL D VE ++A  + GY +  ++     ++ YPL + +   SG +FH+GRFI  +R+ A + PNV+  +G V  LLEE+  + GVQYK K+ G     +APLT+V DG FS  R+SL   KV V
Sbjct:  136 LAAVLSRDGRKVTVIERDLKEPDRIVGELLQPGGYRVLQELGLGDTVEGLNAHHIHGYIVHDYESRSEVQIPYPLSETNQVQSGIAFHHGRFIMSLRKAAMAEPNVKFIEGVVLQLLEEDDAVIGVQYKDKETGDTKELHAPLTVVADGLFSKFRKSLISSKVSV 300          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.694e-33
Identity = 77/165 (46.67%), Postives = 105/165 (63.64%), Query Frame = 2
Query:  374 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALF--KDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKD-GQEPRAYAPLTIVCDGCFSNLRRSLCKPKVDV 859
            LA  L +DGR V VIERD+ EPDRI+GE LQPGGY  L ELGL D VE ++A  + GY +   +     ++ YP+ + +   SG +FH+G+FI  +R+ A + PNV+  +G V  LLEE+  + GVQYK K+ G     +APLT+V DG FS  R++L   KV V
Sbjct:  137 LATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGYVIHDCESRSEVQIPYPVSENNQVQSGVAFHHGKFIMSLRKAAMAEPNVKFIEGVVLRLLEEDDAVIGVQYKDKETGDTKELHAPLTVVADGLFSKFRKNLISNKVSV 301          
BLAST of CX043629 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.870e-31
Identity = 73/165 (44.24%), Postives = 95/165 (57.58%), Query Frame = 2
Query:  374 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLL--EENGTIKGVQYKTKDGQEPRAY-APLTIVCDGCFSNLRRSLCKPKVDV 859
            L   LG+ GR+V V+ERD++EPDRIVGELLQPGG   L ++G+ D VE ID Q   GY +F    +  + YP +       G  FH GRF+  +R+   S PNV + + TV  LL  E    I GV   +K  + P  Y APLTIVCDGCFS  R++     + V
Sbjct:   20 LGAALGRQGRKVLVLERDMSEPDRIVGELLQPGGIEALEKIGIADAVEGIDGQWTSGYQIFYGDSNVSVPYPSKPNGGAYQGIGFHYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTIVCDGCFSKFRKAFIDHPIQV 184          
The following BLAST results are available for this feature:
BLAST of CX043629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERG1_PANGI1.618e-7683.95Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH1.474e-5364.97Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_BRANA7.315e-5364.10Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH3.631e-5262.42Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG11_BRANA2.203e-4948.00Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG13_ARATH1.865e-4860.26Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_HUMAN2.138e-3646.27Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_MOUSE2.793e-3649.70Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_RAT1.694e-3346.67Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_SCHPO7.870e-3144.24Probable squalene monooxygenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12D04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12D04-G8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043629 ID=CX043629; Name=CX043629; organism=Citrus sinensis; type=EST; length=860bp
ACAAAACCCCACGAAAAAACAAACAAAAACAGAAGGAGCCAGCTGCTACT
CCTGCTGTTCCCAAAACAGAAAAGAAATCTTGATCAAACAACGACCGTCC
ATCTTTCTTGCATCATCAACCTCGGGTTCTCACCGTTTCTTCAATCTTTC
TACCGAGAACAAGGCTTCGATGGATCACTACATTGCGGGCACTCTCATTG
CCGCTGTGTTTCTCCTTCTCTTCGTTGTCCGCCGCAACGACAGTAAGAAG
CCAAGGAAGGTTTCCACGACGTACAAGACGCAGAACGACGTTTTTCGGAG
CTCTGTTAACGCCGGAAAGAATGGCTCCCCTACCGACGTCATCATTGTTG
GTGCCGGTGTTGCCGGTGCTGCCTTGGCTCATACTCTTGGCAAGGATGGA
AGACGAGTTCATGTGATAGAAAGAGATGTGACTGAGCCTGACAGAATTGT
TGGTGAGCTGCTTCAGCCTGGAGGATACCTGAAATTAGTTGAATTAGGTC
TTGAGGATTGTGTGGAAGAAATCGATGCCCAGCAAGTACTTGGTTATGCT
CTTTTCAAGGATGGAAAAAGTACAAGACTGTCATATCCATTGGAGAAATT
TCATGCAGATGTTTCTGGAAGGAGCTTCCACAATGGGCGTTTCATTCAGC
GGATGAGAGAAAAAGCAGCTAGTCTTCCCAATGTACGACTGGAGCAAGGA
ACTGTAACATCCCTGCTTGAAGAAAATGGGACTATAAAAGGTGTTCAGTA
CAAAACTAAGGATGGTCAAGAACCTCGTGCTTACGCTCCTCTTACAATTG
TTTGTGATGGTTGCTTCTCAAACCTGCGCCGTTCACTTTGCAAACCAAAG
GTTGATGTGC
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