CX043620

Overview
NameCX043620
Unique NameCX043620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1036 contig Csv1_Contig1036:282..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.459e-15
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 265
            +  WA  +GI+  N ++LC     + A+L DM  LG+E+ L  FE VKA+ +  + F+V+NGLLTPT K KRP+ ++YF K I ++Y+
Sbjct:  608 MPCWAQKKGIE-GNYQELCKSKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.709e-14
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 271
            L +WA   G +  + E+LC +   + A+L DM  LG+++ L+ FE VK +TL  E F+++NGLLTPT K KRP+ + YF   I D+Y+ +
Sbjct:  608 LCSWAQKRGFE-GSFEELCRNKDVKKAILEDMVRLGKDSGLKPFEQVKGITLHPELFSIDNGLLTPTMKAKRPELRNYFRSQIDDLYSTI 696          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.036e-14
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 262
            + +WA  +GI+    ++LC     + A+L DM  LG+E+ L  FE VKA+ +  + F+V+NGLLTPT K KRP+ ++YF K I ++Y
Sbjct:  608 MPSWAQKKGIE-GTYQELCMKKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.036e-14
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 271
            L +WA   G+Q  + E+LC +     A+L D+  LG+EA L+ FE VK + +  E F+++NGLLTPT K KRP+ + YF   I ++YA +
Sbjct:  609 LPSWAQKRGLQ-GSFEELCRNKDINKAILDDLLKLGKEAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELYATI 697          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 1.345e-13
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 265
            + +WA   GI+      LC +   + A+L DM  LG+E+ L  FE VKA+ +  + F+V+NGLLTPT K KRP+ ++YF K I ++Y+
Sbjct:  608 MPSWAQKRGIE-GTYADLCTNKDLKKAILEDMVRLGKESGLHSFEQVKAIHIHSDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.294e-13
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 271
            L ++AA  G++  + E+LC +   R A+L D+  +G+E+ L+ FE VKA+ L  EPF++ENGLLTPT K KR +  +YF   I  +Y  +
Sbjct:  593 LPSFAAKLGVK-GSFEELCQNQVVREAILEDLQKIGKESGLKTFEQVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLYEHI 681          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.294e-13
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 271
            L +WA   G Q  + E+LC +     A+L DM  LG+ A L+ FE VK + +  E F+++NGLLTPT K KRP+ + YF   I ++Y+ +
Sbjct:  609 LPSWAQKRGFQ-GSFEELCRNKDINKAILEDMVKLGKNAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELYSTI 697          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 271
            L +WA   G +  + E+LC +   + A+L DM  +G+++ L+ FE V+ + L  E F+V+NGLLTPT K KRP+ + YF   I ++Y+ +
Sbjct:  608 LASWARKRGFE-GSFEELCRNKDVKKAILEDMVRIGKDSGLKSFEQVRGIALHPELFSVDNGLLTPTMKAKRPELRNYFRSQIDELYSTI 696          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 271
            L ++AA  G++  + E+LC +   + A+L D+  +G+E  L+ FE VK++ +  EPFT+ENGLLTPT K KR +  ++F   I  +Y  +
Sbjct:  593 LPSFAAKIGVK-GSFEELCKNQCVKEAILEDLQKIGKEGGLKSFEQVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLYESI 681          
BLAST of CX043620 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 271
            L ++AA  G++  + E+LC +   + A+L D+  +G+E  L+ FE VK++ +  EPF++ENGLLTPT K KR +  ++F   I  +Y  +
Sbjct:  593 LPSFAAKIGVK-GSFEELCQNQCVKKAILEDLQKVGKEGGLKSFEQVKSIFVHPEPFSIENGLLTPTLKAKRVELAKFFQTQIKSLYESI 681          
The following BLAST results are available for this feature:
BLAST of CX043620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ACSL6_RAT5.459e-1543.18Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSL1_HUMAN2.709e-1442.22Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL6_MOUSE6.036e-1442.53Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]
ACSL1_MOUSE6.036e-1442.22Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL6_HUMAN1.345e-1342.05Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
ACSL5_HUMAN2.294e-1342.22Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]
ACSL1_RAT2.294e-1341.11Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL1_CAVPO2.995e-1338.89Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL5_MOUSE1.942e-1238.89Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
ACSL5_RAT7.378e-1237.78Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12C11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C11-E22-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043620 ID=CX043620; Name=CX043620; organism=Citrus sinensis; type=EST; length=598bp
TTTAAAAGCATGGGCTGCATCTGAAGGCATTCAGTATGAAAACTTAGAGC
AACTTTGCAATGACCCAAGAGCGAGGGCTGCTGTGTTGGCTGATATGGAT
TCCCTAGGAAGAGAAGCTCAGTTGAGAGGCTTTGAATTTGTAAAAGCTGT
GACTTTGGTGCTCGAGCCATTCACAGTGGAAAATGGACTGCTCACTCCAA
CATTTAAGATAAAGAGACCACAAGCAAAGCAATACTTTGCAAAAGCCATA
GCGGATATGTATGCTGAGCTTTCTAGATCTGATCCCTCACCAAATACATT
GTGAAGACCATCAAAATCACAGATGTGTAGAATTAAGACTGCATTTCAAG
ATTTAGCTTTAGCAGATGTCCCACAATAAGTAACGACCGGTGTCGAGGCA
TTCCTTGTTTGTTCTTTAATTGTTTTGCCAAAATAAAGGGAAATTCAAAT
ATTTAAGCAGCCCCTCTCTGTTGATATGAGCTTGTGGCCTGTATCTTTTT
ATACGCATAGGATTGTAATACATTGTATTAACCATTTCGTTTTCACAATG
AATCATATTTTAATGAATATTGTTTAAAGAATAAAAAAAAAAAAAAAA
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