CX043618

Overview
NameCX043618
Unique NameCX043618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1611 contig Csv1_Contig1611:587..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043618 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.325e-51
Identity = 102/165 (61.82%), Postives = 119/165 (72.12%), Query Frame = 2 
Query:    2 WLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK-QPKDQSA-NHNXXXXXXXXXXRPAESQTKAVKMSPPP-KXXXXXXXXXXXXXXQGAT-CGACGDNYGTDEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCSSKRAR 484
            WLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G AK Q KD+S+ ++N          R +ES+ K  K  P   +              QG T CGACG++Y  DEFWICCD+CE WFHGKCVKITPA+AEHIKQYKCPSCS+KRAR
Sbjct:   90 WLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254
The following BLAST results are available for this feature:
BLAST of CX043618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.325e-5161.82PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12C10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C10-E20-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043618 ID=CX043618; Name=CX043618; organism=Citrus sinensis; type=EST; length=715bp
CTGGTTATCACTGGTTGCAGTGCACAGTGATTCATGGTTGCTTGCTGTAG
CTTTTTATTTTGGTGCACGCTTTGGATTTGGCAAAAATGAAAGGAAGAAA
CTTTTCCAGATGATAAATGATCTCCCGACCATCTTTGAAGTTGTAACTGG
AAATGCTAAGCAACCAAAGGACCAATCTGCTAATCACAATAGCAGCAAAA
GCAAATCGAGTGGAAAGTCTCGTCCAGCTGAATCACAAACCAAAGCAGTG
AAGATGTCTCCACCACCGAAGGACGATGATGATAGTGGGGATGAAGAAGA
GGAAGATGATGAACAGGGCGCCACCTGTGGAGCATGCGGGGATAACTATG
GCACTGACGAATTCTGGATCTGCTGCGATATCTGTGAGAAATGGTTCCAC
GGCAAATGTGTAAAGATTACACCTGCGAAGGCCGAGCACATCAAGCAGTA
CAAGTGCCCCAGCTGCAGTAGCAAGAGGGCTAGAGTTTAAGATCAGTTAT
GAAGTTGGGAATTGAACAACGATTGAACAAAGCAAGACAAGATTAGAACT
TTTTTCGTTACAGTTTGAGAGTAAAACAGAGTCAGATACCTGTTTTAGTC
AATGAATTTGCAACTCCTGTTTAATTTTCTCTGGAATTTGTGTTTTGAAA
AAGCTGCTGGCATTTAAAAATGCAAATGTTGGAGCAAGTTTTCTGGTGGT
TAAAAAAAATGTGAA
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