CX043609

Overview
NameCX043609
Unique NameCX043609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:377..1112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.800e-69
Identity = 123/215 (57.21%), Postives = 149/215 (69.30%), Query Frame = -1
Query:  107 AFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYGLNLMAQFM 739
            +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSAIWFWMT Q PKPSC +VI   W+PS  D    R+PG+G+  NIINGG+ECG+  +  V++RIGF+  +CG  G+ PG+N DC NQR +G  L+   M
Sbjct:  111 SFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.280e-68
Identity = 124/215 (57.67%), Postives = 149/215 (69.30%), Query Frame = -1
Query:  107 AFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYGLNLMAQFM 739
            +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATD V+SFKSAIWFWMT Q PKPSC +VI   W+PS  D    R+PG+G+  NIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDN DC NQR +G  L+   M
Sbjct:  107 SFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.672e-68
Identity = 124/216 (57.41%), Postives = 149/216 (68.98%), Query Frame = -1
Query:  107 KAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYGLNLMAQFM 742
            ++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSA+WFWMT Q PKPSC +VI   W+PSA D    RLPG+G+  NIINGG+ECG   +  V++RIGF+  +C   G+ PGDN DC NQR +G  L+   M
Sbjct:  117 RSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.352e-68
Identity = 123/216 (56.94%), Postives = 149/216 (68.98%), Query Frame = -1
Query:  107 KAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYGLNLMAQFM 742
            ++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSA+WFWMT Q PKPSC +VI   W+PS+ D    RLPG+G+  NIINGG+ECG   +  V++RIGF+  +C   G+ PGDN DC NQR +G  L+   M
Sbjct:  112 RSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.296e-68
Identity = 122/211 (57.82%), Postives = 147/211 (69.67%), Query Frame = -1
Query:  119 AFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYGLNLM 739
            +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATD V+SFKSAIWFWMT Q PKPSC +VI   W+PS  D    R+PG+G+  NIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDN DC NQR +G  L+
Sbjct:  107 SFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPG-DYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLL 314          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.083e-67
Identity = 121/211 (57.35%), Postives = 147/211 (69.67%), Query Frame = -1
Query:  119 AFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYGLNLM 739
            +FP FG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G+   DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATD ++SFKSAIWFWMT Q PKPSC +VI   W+PS  D    R+PG+G+  NIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDN DC NQR +G  L+
Sbjct:  105 SFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPG-DYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLL 312          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.415e-67
Identity = 121/208 (58.17%), Postives = 146/208 (70.19%), Query Frame = -1
Query:  131 KAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYG 742
            K+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC  GK YYGRGP+QLSWNYNY  C            NPDL+ATD VLSFK+A+WFWMT Q PKPSC +V+   W+PSA D   GRLPGYG+  N++NGG+ECG   N  V +R+GFF  +CG  G+  G+N DC NQRP+G
Sbjct:   39 KSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNP-SSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLL--GNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 9.172e-67
Identity = 119/209 (56.94%), Postives = 142/209 (67.94%), Query Frame = -1
Query:  122 KAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYGLNL 742
            KAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC    +YYGRGPIQ+SWNYNY +C           NNPDL+ATDPV+SFK+A+WFWMT Q PKPSC +VI   W PS+ D   GRLPGYG   NIINGG+ECG   +  V++RIGF+  +C  FGI  GDN DC +QRP+G +L
Sbjct:  105 KAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLL--NNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSL 311          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 1.198e-66
Identity = 118/207 (57.00%), Postives = 144/207 (69.57%), Query Frame = -1
Query:  134 KAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPY 742
            K+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYCF +E   AS DYC+P+  +PC    +YYGRGP+QLSWNYNY  C           NNPDL+A D V++FK+AIWFWMTAQPPKPSC  VI  +W+PS  D   GRLPGYG+  NIINGG+ECG   +  V +RIGF+  +C  FG+ PG N DC NQR +
Sbjct:  123 KSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPAS-DYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLL--NNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CX043609 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.014e-65
Identity = 121/212 (57.08%), Postives = 146/212 (68.87%), Query Frame = -1
Query:  119 KAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIFEEWKPSANDVNPGRLPGYGLTPNIINGGIECGYVGNDAVRNRIGFFTPFCGKFGIQPGDNFDCSNQRPYGLNLM 742
            ++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFK+A+WFWMT Q PKPSC +VI   W PS+ D    RLPG+G+  NIINGG+ECG   ++ V++RIGF+  +C   G+ PGDN DC NQR +G  L+
Sbjct:  116 RSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPG-DYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALL 324          
The following BLAST results are available for this feature:
BLAST of CX043609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIC_SOLLC9.800e-6957.21Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_SOLTU1.280e-6857.67Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_TOBAC1.672e-6857.41Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_TOBAC6.352e-6856.94Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI3_SOLTU8.296e-6857.82Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU1.083e-6757.35Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_CARPA1.415e-6758.17Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_PEA9.172e-6756.94Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIB_ARATH1.198e-6657.00Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_SOLTU1.014e-6557.08Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_12C06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C06-E12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043609 ID=CX043609; Name=CX043609; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTAGTTGGCCACCTACAAGTGGGACATCTAAAGTT
TTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATCATGA
TGATCACATAAATTGGGCCATCAAATTAAGGCCATAAGGCCGTTGGTTGG
AGCAATCAAAATTGTCACCAGGCTGAATCCCAAACTTGCCACAAAAAGGG
GTAAAAAACCCAATACGGTTACGTACAGCGTCATTCCCAACGTAGCCACA
TTCAATTCCACCGTTGATTATATTTGGGGTTAAACCGTATCCCGGAAGCC
GGCCGGGGTTTACGTCATTTGCTGATGGTTTCCATTCCTCGAAAATGACT
TCGGGGCACGATGGCTTTGGGGGCTGGGCAGTCATCCAAAACCAAATTGC
TGACTTGAATGAAAGTACTGGATCAGTAGCAAGAAGGTCTGGATTGTTCA
ACAACTCCTCTCCTAGCCCTAGGCCTTCTCCGCACCGTAAGTAATTGTAA
TTCCAAGAAAGTTGAATTGGACCTCGGCCATAGTACTTCCCTCGACATGG
ATAGTTAGGATCACAGTAGTCGGACGACGCAGCGCCAACTTCCCTATTAA
AGCAATATCCCCAAGCATATTCGCCACCAGGTGCATCGGGCCATCCCCCA
GTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCAATTTCTCTTTTACG
CATGGTTTCATTTCCAGAATTACCAAAGGCTGGAAAAGCTTT
back to top