CX043604

Overview
NameCX043604
Unique NameCX043604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2179 contig Csv1_Contig2179:109..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.980e-81
Identity = 150/209 (71.77%), Postives = 173/209 (82.78%), Query Frame = -1
Query:  132 SQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLPYFVK 758
            SQL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT             L+VILS+CLT+YG+ASF+EGEPSTAP LTLTGRKK PD LQTADGWAK        GISGVIWAYFLLYVL+LPY+VK
Sbjct:   10 SQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.580e-80
Identity = 152/210 (72.38%), Postives = 171/210 (81.43%), Query Frame = -1
Query:  132 SQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLPYFVK 758
            SQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT             LVVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQLQTADGWAK        GISGV WAYFLLYVL+LPYFVK
Sbjct:   10 SQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.947e-77
Identity = 148/210 (70.48%), Postives = 168/210 (80.00%), Query Frame = -1
Query:  132 SQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLPYFVK 758
            SQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE            LVVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQLQ+ADGWAK        G+SGV WA FL+YVL+LPY+ K
Sbjct:   10 SQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.523e-72
Identity = 132/192 (68.75%), Postives = 155/192 (80.73%), Query Frame = -1
Query:  132 PRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLPYFVK 707
            PRG+SG+        R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT +           LV ILS+CLT+YG+ASF+EGEPSTAP LTLTGRKKE D+LQTA+GW++        G+SG +WAYFLLYVL+LPYF K
Sbjct:   23 PRGMSGASLT-----RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28
Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = -1
Query:  162 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLL 611
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+           L++I++ CL IYG+ SF+  +                +QLQ+A GW +         I G  +AY L+
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------EQLQSAKGWRQFTSGWLVGSIGGASFAYILI 138          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.909e-28
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = -1
Query:  162 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLL 605
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT++           L++I SI + IYGI +F   E +              D+LQTA+GW +         + G  +AY LL
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTFDNSENN--------------DKLQTANGWRQLASGFLLGAVGGAGFAYILL 138          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.309e-27
Identity = 57/150 (38.00%), Postives = 91/150 (60.67%), Query Frame = -1
Query:  162 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLL 611
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++           L+++ + CL  YG+ SF +G  S+             D L+T++GW++         +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 63/156 (40.38%), Postives = 89/156 (57.05%), Query Frame = -1
Query:  144 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLP 611
            + I+P N DPF+G+L TP+++S      L NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++           L++IL+ CL++YG  SF+              R    D LQTA+GW +         + G  +AY LL   N+P
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKDPLQTAEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_GRATL (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.372e-27
Identity = 63/154 (40.91%), Postives = 89/154 (57.79%), Query Frame = -1
Query:  144 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLP 605
            IQ  N DPF+G+L TP+++S      L+NLPAYR  +SPLLRG+E+G+AHG+ LVGPF K GPLRNT++           L++IL++CL++YG  SF + +                D LQT +GW +         + G  +AY LL   N+P
Sbjct:    5 IQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPFDKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFDKDDAK--------------DLLQTTEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of CX043604 vs. ExPASy Swiss-Prot
Match: PSAL_SYNEN (Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.145e-26
Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = -1
Query:  162 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLL 611
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+L G+EVG+AHG+ L+GP+VK GPLR++++           L+++ + CL  YG+ SF +G  S+             D L+T++GW++         +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
The following BLAST results are available for this feature:
BLAST of CX043604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA3.980e-8171.77Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH2.580e-8072.38Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL5.947e-7770.48Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU7.523e-7268.75Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH1.755e-2842.00Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_CYACA3.909e-2841.22Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_THEEB3.309e-2738.00Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_PORPU7.372e-2740.38Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_GRATL7.372e-2740.91Photosystem I reaction center subunit XI OS=Gracil... [more]
PSAL_SYNEN2.145e-2637.33Photosystem I reaction center subunit XI OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C01-E2-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043604 ID=CX043604; Name=CX043604; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTTTTTTTTCAGTAACTGAAGCAAGTTTCATTTGCAATAAACA
TCCCAAACAGGTAGATTTACAGAGTAGCAAATTGAGATACATGGGATCTT
AAAACCAAAGAGTAGATGTTACATATTTCTATTTAACGAAGTAGGGAAGG
TTAAGAACGTAAAGCAGGAAATAAGCCCAAATGACACCAGAAATTCCACC
AAAGAAGAATCCTCCAGTGAACTTAGCCCACCCATCAGCTGTTTGCAACT
GATCAGGCTCCTTCTTCCTTCCGGTCAATGTTAAGCCTGGAGCAGTGGAT
GGCTCTCCTTCACTGAATGAAGCAATTCCATAGATTGTCAAGCAAATGCT
GAGGATCACAACAAGGCCACCAGCTGCCAATGACCCTGCTGGTCCTGCTA
TTTCTGTGTTTCTCAATGGCCCTGCCTTAACAAATGGACCCACAAGGAGG
AATCCATGGGCCAACCCCACCTCTACTCCTCTCAGTAGTGGGCTGACTGC
CGTCCGATAAGCTGGTAGATTTGAGAGGTACCATGCAATCAATGGACTTG
ATGTAATTGGAGTCTCCAAGCTTCCAATGAATGGATCACCATTGATTGGC
TGAATAACTTGGTAAGTTGGCTTTTCAGATTGGATAGCTTTGACAAGGAA
ACGAGGGCTTCTCTTGGAGGGAACAACCCTGAATGGAGATCCAGAGATAC
CCCTTGGAGTAAGCAGGCTCCTGGAAACTGGTGAAGTAAAGCTACTCTTG
AGCTGGCT
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