CX043603

Overview
NameCX043603
Unique NameCX043603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4105 contig Csv1_Contig4105:1..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 441.039 bits (1133), Expect = 3.792e-123
Identity = 208/244 (85.25%), Postives = 232/244 (95.08%), Query Frame = 1
Query:  106 MSNSAIDVPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSF 837
            MS S++D+P +GGFSFDLC+RNDML +KG+  PSF KTGTTIVGLIF+DGVILGADTRATEGPIV DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRVVTALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV +AICSGIFNDLGSGSNVD+CVITKGHKEYLRN++ PNPRT+V++KGYSF
Sbjct:    1 MSQSSVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYMEPNPRTYVSSKGYSF 244          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 436.802 bits (1122), Expect = 7.152e-122
Identity = 206/244 (84.43%), Postives = 231/244 (94.67%), Query Frame = 1
Query:  106 MSNSAIDVPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSF 837
            MS S +DVP +GGFSFDLC+RNDML +KG+  PSF KTGTTIVGLIF+DGVILGADTRATEGPIV DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRV+TALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV ++ICSGIFNDLGSGSNVD+CVITKG+KEYLRN++ PNPRT+V++KGYSF
Sbjct:    1 MSQSTVDVPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYLRNYMEPNPRTYVSSKGYSF 244          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.961e-88
Identity = 153/229 (66.81%), Postives = 187/229 (81.66%), Query Frame = 1
Query:  133 SRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVN 819
            +RGGF FDLC RN++L K G+ +  F KTGTTIVG++++ GV+LGADTRATEGPIV DKNCEKIHY+A NIYCCGAGTAADTE+ T ++SS+L+LH+  TG+++RV+TALT+LK+ LF YQG++ AAL+LGG+D  GP LHTIYPHGSTD LP+ TMGSGSLAAMA+FE+KYK  +TK+E I LV +AI SGIFNDLGSGSNVDV VI       LRN+  PN R F N
Sbjct:    5 NRGGFDFDLCNRNNVLEKTGLRMKGFMKTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTVIEPSGVTVLRNYQTPNERKFRN 233          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 1.458e-82
Identity = 148/237 (62.45%), Postives = 188/237 (79.32%), Query Frame = 1
Query:  115 SAIDVPSR--GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPR 807
            +A+ V  R  GGFSFD CRRN +L    AKKG  LP+ RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E  QLV +AI +GIFNDLGSGSN+D+CVI+K   ++LR + +PN +
Sbjct:    2 AAVSVYERPVGGFSFDNCRRNAILEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKK 238          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.904e-82
Identity = 145/238 (60.92%), Postives = 186/238 (78.15%), Query Frame = 1
Query:  106 MSNSAIDVPSRGGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPR 807
            M+  ++  P  GGFSFD CRRN +L    AK+G  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E   LV +AI +GIFNDLGSGSN+D+CVI+K   ++LR + +PN +
Sbjct:    1 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKK 238          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 3.248e-82
Identity = 147/237 (62.03%), Postives = 188/237 (79.32%), Query Frame = 1
Query:  115 SAIDVPSR--GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPR 807
            +A+ V  R  GGFSFD CRRN +L    AKKG  LP+ RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI +GIFNDLGSGSN+D+CVI+K   ++LR + +PN +
Sbjct:    2 AAVSVYERPVGGFSFDNCRRNAVLEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKK 238          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 5.540e-82
Identity = 146/238 (61.34%), Postives = 186/238 (78.15%), Query Frame = 1
Query:  106 MSNSAIDVPSRGGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPR 807
            M+  ++  P  GGFSFD CRRN +L    AKKG  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI +GIFNDLGSGSN+D+CVI+K   ++LR   +PN +
Sbjct:    1 MAAVSVFQPPVGGFSFDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPFSVPNKK 238          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.236e-82
Identity = 144/227 (63.44%), Postives = 182/227 (80.18%), Query Frame = 1
Query:  139 GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPR 807
            GGFSFD CRRN +L    AKKG  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI +GIFNDLGSGSN+D+CVI+K   ++LR + +PN +
Sbjct:   12 GGFSFDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKK 238          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.353e-70
Identity = 133/234 (56.84%), Postives = 172/234 (73.50%), Query Frame = 1
Query:  142 GFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG-HKEYLRNHLLPNPRTFVNAKGYSFP 840
            G SFD  +RN+ LA+     P    TGTTIVG+ F +GV++ ADTR+T+GPIV DKNC K+H ++P I+C GAGTAADTEAVT ++ S ++LH  +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HGSTD   + ++GSGSLAAMA+ ES +K+ LTK+E I+L  DAI +GI+NDLGSGSNVDVCV+  G   EYLRN+L PN R     K Y FP
Sbjct:    3 GLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVRE-EKQKSYKFP 235          
BLAST of CX043603 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.414e-69
Identity = 128/233 (54.94%), Postives = 169/233 (72.53%), Query Frame = 1
Query:  127 VPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAK 825
            +  R GF F+  +RN +L +KG   P    TGTTIVG+I +D ++LGADTRAT GPI+ DKNC+K+H ++PNI+C GAGTAADTE VT M+SS ++LH  +T R+ RVVTALT+LK+HLF YQG++ A LVLGG DC GPHL TI  HGS+D LP+  +GSGSLAA+++ E+KY+  L + E ++LV +AI +GIFNDLGSGSN D+ VI +      R +  PN R    +K
Sbjct:    4 INERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYSKPNERATKQSK 236          
The following BLAST results are available for this feature:
BLAST of CX043603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
PSB7B_ARATH3.792e-12385.25Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH7.152e-12284.43Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_DICDI3.961e-8866.81Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7_PIG1.458e-8262.45Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_HUMAN1.904e-8260.92Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB7_BOVIN3.248e-8262.03Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB7_MOUSE5.540e-8261.34Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_RAT7.236e-8263.44Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_YEAST6.353e-7056.84Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSB7_SCHPO2.414e-6954.94Probable proteasome subunit beta type-7 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C01-E2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043603 ID=CX043603; Name=CX043603; organism=Citrus sinensis; type=EST; length=840bp
GGCCCCCCCTAAGACTCGAAGTCGCTCGCTGTCGCTGCTGCTCTCCAAAG
CTCACGCCTTGTTTTCATTCCAGTGGGATCAATCTCAGGTTGAAGAAAGT
TTAAAATGTCAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGATTTAGT
TTTGATCTCTGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGTCAACCT
TCCATCTTTCCGAAAGACGGGGACGACCATTGTTGGGTTGATTTTCCAGG
ATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAGTT
TGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACATATATTG
TTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGTCA
GCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGGTT
GTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTA
TGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCATC
TTCACACAATATATCCACATGGTTCAACTGACACTTTACCATTTGCGACA
ATGGGTTCTGGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATACAA
AGAAGGCCTGACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCATTT
GCTCTGGTATATTCAATGACTTGGGAAGTGGAAGCAATGTTGATGTCTGT
GTAATTACCAAGGGGCACAAAGAGTACCTGAGGAACCACCTTTTGCCAAA
TCCTCGCACCTTTGTCAATGCCAAAGGCTATTCTTTCCCT
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