CX043562

Overview
NameCX043562
Unique NameCX043562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.510e-29
Identity = 76/232 (32.76%), Postives = 122/232 (52.59%), Query Frame = 2
Query:  158 RRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVY--LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFES 847
            + WWK +  L      + F+ P++L ++  Y   + +V S GHLG+ ELA A+L+N  AT+T FA   G+  AL+T+  Q FG+ +Y M+G++LQ                    E IL+ L QDP     AA YM+ ++    AY + + + RFLQ Q I  P+ +  A+ + I+  + Y FV+      GF GA +A +++LW +  +L+ Y++        W GFS E+
Sbjct:   91 KAWWKELTLL------IKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYIMKVNG-RQAWGGFSREA 315          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.791e-29
Identity = 71/230 (30.87%), Postives = 118/230 (51.30%), Query Frame = 2
Query:  161 RWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESF 850
            RWW + L + E+K     S   I+ +V  Y +  V+VM  GHLG L+LAGA++A        +  M+G++ A++T+CGQ +GA+ Y  +GI  Q                  Y+ PIL  + Q  +I+ +  ++ + +IP + A+ +   + RFLQ Q+IV PL + S     +H  + +    +   G  GA+L  S S W+ + +   Y+L +   + TW GFS  +F
Sbjct:   42 RWWLK-LAVWESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAF 270          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.846e-27
Identity = 68/221 (30.77%), Postives = 114/221 (51.58%), Query Frame = 2
Query:  188 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESF 850
            +EA+  +  + P  L+ +  + I +VS +  GHLG++EL   +LA +   +TG A   GL+GA +TL  Q FG  + +++GI LQ                   TE IL+L  QDP +SK   +Y+   +P L A  + Q + ++LQ Q I+ P +    +    +    Y  +Y+  LG  G++ A +VS +I M++L  Y++  + +  TW G+S   F
Sbjct:   47 QEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACF 267          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 76/236 (32.20%), Postives = 118/236 (50.00%), Query Frame = 2
Query:  149 SSRRRWWKRVLDL----EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFE 844
            S  RR W R L L    EE +  +V + P  LA +  + I  VS +  GHL +LEL   TLA +   V G +   GLS A +TL  Q +G+++ + +G+ LQ                   T+ IL+L  QDP++S+    Y+   IP L A  +    +++L  Q IV+P +        ++    Y FVY   LG  G++LA +V+ +   L+L  Y+L +K ++ TW G+S E
Sbjct:   15 SPERRHWLRCLVLSDFREELRALLVLACPAFLAQLMVFLISFVSSVFCGHLSKLELNAVTLAIAVINVMGVSVGFGLSSACDTLISQTYGSRNLKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQTYVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGSALANTVAQFTLALLLFLYILRSKVYQATWGGWSLE 250          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.482e-26
Identity = 71/220 (32.27%), Postives = 111/220 (50.45%), Query Frame = 2
Query:  191 EAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESF 850
            EA   V  + P+ LA +  + I +VS +  GHLG++EL   TLA S   VTG +   GL+ A +TL  Q FG K+ + +G+ LQ                   TE +L+LL QDP +++ A +Y+   IP L A  + Q   R+LQ+Q I++P +        ++ G+    +Y   LG  G++ A + S +    +L  YV   +   HTW G++ E F
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECF 262          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.850e-25
Identity = 70/220 (31.82%), Postives = 111/220 (50.45%), Query Frame = 2
Query:  185 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFE 844
            LEE +  +V + P  LA +  + I  +S +  GHLG+LEL   TLA +   VTG +   GLS A +TL  Q +G+++ + +G+ LQ                   TE IL+L  QDP +S+    Y+   IP L A  +    +++L  Q IV+P I        ++    Y F+Y   LG  G++LA ++S +   + L  Y+L  +  + TW G+S+E
Sbjct:   32 LEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWE 251          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.463e-24
Identity = 73/237 (30.80%), Postives = 118/237 (49.79%), Query Frame = 2
Query:  143 ATSSRRRWWKRVL---DLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFE 844
            A ++ RR  +R+L     EE +  +V + P  LA +  + I  +S +  GHLG+LEL   TLA +   VTG +   GLS A +TL  Q +G+++ + +G+ LQ                   TE IL+L  QDP +S+    Y+   IP L A  +    +++L  Q IV+P +        ++    Y F++   LG  G++LA ++S +   + L  Y+L  K    TW G+S+E
Sbjct:   14 ADAAERRGLRRLLLSGFQEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWE 250          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.496e-24
Identity = 64/206 (31.07%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  221 PMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFS 838
            P+ ++ +  + I  VS +  GHLG+ ELAG  LA +   VTG +   GL+ A +TL  Q FG+ + + +G+ LQ                   TEPIL+ + Q P+++  + LY+K  +P L A  + Q   R+LQ Q I+ P +   A    ++  I Y F++L  LG  G++ A ++S +   + L  Y+      + TW+G+S
Sbjct:   62 PVFISQLMIFLISFVSTVFCGHLGKTELAGVALAIAVINVTGISIGSGLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPAAFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWS 267          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.259e-24
Identity = 66/217 (30.41%), Postives = 109/217 (50.23%), Query Frame = 2
Query:  188 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFS 838
            +EA+   V S P+ L  V  +   +V  +  GHLG++ELA  TL  ++  V G +   GLS A +TL  Q FG+ + + +G+ LQ                   T+ IL+L  QDP++S+    Y    IPGL A  +   + ++LQ Q IV P +    +   ++    YA V + +LG +G++ A ++S ++    L  +++  K    TWEG+S
Sbjct:   58 DEARALFVLSGPLFLFQVLNFLTYVVGTVFCGHLGKVELASVTLGVAFVNVCGVSVGAGLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGLPAIFLYSLLAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEGWS 274          
BLAST of CX043562 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.239e-23
Identity = 63/206 (30.58%), Postives = 104/206 (50.49%), Query Frame = 2
Query:  221 PMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVTQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFS 838
            P+ L  V  + I +VS +  GHLG++ELA  TLA ++  V G +  +GLS A +TL  Q FG+ + + +G+ LQ                   T+ IL+L  QDP +S+    Y+   IPGL    +   + ++LQ Q I  P +    +   ++    YA V + +LG +G++ A  +S +   + L+ Y++  K    TW G+S
Sbjct:   40 PLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWS 245          
The following BLAST results are available for this feature:
BLAST of CX043562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
YJ2D_SCHPO1.510e-2932.76Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
TT12_ARATH9.791e-2930.87Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_XENTR1.846e-2730.77Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_RABIT1.197e-2632.20Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A2_MOUSE3.482e-2632.27Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_MOUSE3.850e-2531.82Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_RAT1.463e-2430.80Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_DANRE2.496e-2431.07Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A2_RABIT3.259e-2430.41Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
S47A2_PONAB1.239e-2330.58Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11H09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11H09-O17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043562 ID=CX043562; Name=CX043562; organism=Citrus sinensis; type=EST; length=868bp
TTTCGCCATCAAAGAATAACAACACACGAGAGTTTGACTCTTCTAAGCAT
TTGGCTAAACGATGTCGGCAAACACCGATTTAGACAATACGACGTCGCCT
TTGTTAGAGGCTGGTGGTGATGATGATCACGGAGAAGAAGAAGCAACCAG
CAGCAGGAGGCGGTGGTGGAAACGAGTTTTGGACTTGGAAGAGGCCAAGA
ATCAAGTGGTGTTTTCGCTCCCCATGATTCTTGCTAATGTTTTTTATTAT
GCAATTCCTTTGGTTTCTGTCATGTCTGCTGGCCACCTTGGCCAGCTTGA
GCTTGCTGGTGCCACACTTGCCAACTCTTGGGCCACCGTCACAGGATTCG
CTTTCATGATAGGATTAAGTGGAGCACTTGAAACACTTTGCGGTCAAGGA
TTTGGTGCAAAACATTACAGGATGTTGGGAATATATCTGCAAGCATCTTG
GATTACATCATTATTTTTCTCAATCATCATATCTTTCTTGTGGATCTACA
CAGAACCAATACTTATTTTACTTCATCAAGATCCCAGCATATCAAAACAA
GCAGCTCTCTACATGAAGTATCTTATTCCCGGTCTAGTTGCATACGGGGT
TACACAGAACATCCTAAGGTTTCTTCAGACACAATCCATAGTCATTCCAT
TGATCTTCTTCTCAGCTCTCCCAATGGCAATTCATTTTGGCATTGCATAT
GCTTTTGTATATTTGACATCCCTTGGTTTTAAGGGAGCTTCACTAGCAGC
TTCAGTTTCGTTATGGATATCGATGCTTATGCTGGTAACTTATGTCCTTT
GTGCAAAGAAGTTTGAGCATACGTGGGAAGGATTTTCTTTTGAATCATTC
AGTTTCATCCTCACCATC
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