CX043533

Overview
NameCX043533
Unique NameCX043533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043533_ssr163 microsatellite CX043533_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
CX043533_ssr36 microsatellite CX043533_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1880 contig Csv1_Contig1880:23..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.590e-59
Identity = 112/181 (61.88%), Postives = 138/181 (76.24%), Query Frame = 2
Query:  287 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLTTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            MS VNL +W  T  + NQA+  RS       PF  L +L +S A ++  RP+S +SA+ T EE         P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKRVRP LCLAAC+LVGG++SMAMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++GE
Sbjct:    1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGE 181          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.538e-50
Identity = 96/151 (63.58%), Postives = 120/151 (79.47%), Query Frame = 2
Query:  353 RSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            +S    P   +T  P+SL  +R     S S++ T E+N   + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES+AMPA C++EMIHTMSLIHDDLPCMDND LRRGKPTNH +YGE
Sbjct:   24 QSRSRSPPSLITLKPISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGE 174          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.787e-47
Identity = 103/184 (55.98%), Postives = 126/184 (68.48%), Query Frame = 2
Query:  287 MSCVNLAAWT--------QTCSIFNQASSRRSNKTQPFRTLTTLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            M+ V L +W            SI  ++ SR    T       T P+S  S+R       +  S+V T E+N   S   +FDF SY+I KA  VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES AMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++GE
Sbjct:    1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPIT------LTKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGE 178          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.899e-46
Identity = 99/186 (53.23%), Postives = 128/186 (68.82%), Query Frame = 2
Query:  278 LTKMSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLTTLPVS-------LASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            +  M+ V+L A  Q C +FNQ  S +S     F     +P+        L  +RP  P+++SA+ T +E+           F+FK Y+ +KA +VN+ALD A+ +K+P  IHE+MRYSLLAGGKRVRP+LCLAAC+LVGG++  AM AAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH IYGE
Sbjct:    1 MRSMNLVDLWA-QQACLVFNQTLSYKS-----FNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGE 180          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.431e-45
Identity = 98/169 (57.99%), Postives = 125/169 (73.96%), Query Frame = 2
Query:  353 RSNKTQPFRTLTTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            RSN   P +    LP+S   S   R+P+      SISA+    QT EE+ + S          +FDFK+YMI KA++VN+AL+ AV +++P+KIHESMRYSLLAGGKRVRP+LC+AAC+L GG ES+AMP+AC++EMIHTMSL+HDDLPCMDND LRRGKPTNH ++GE
Sbjct:    2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGE 168          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41
Identity = 80/153 (52.29%), Postives = 112/153 (73.20%), Query Frame = 2
Query:  341 ASSRRSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            A++RR  +       + +  ++ +++  R    S+++ + E      +FDFK YMI KA T+N+ALD A+ L +P+ IH++MRY++LAGGKRVRP+LCLAAC+LVGG E +A+ AAC++EMIHTMSLI DDLPCMDND LRRGKPT H ++GE
Sbjct:   31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGE 183          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.381e-40
Identity = 86/162 (53.09%), Postives = 111/162 (68.52%), Query Frame = 2
Query:  326 SIFNQASSRRSNKTQPFRTLTTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            S+F Q+  RR N     ++L       P S  + +  R +     +  + N A    FDFK YMI+KA +VN ALD +V L++P+ + E++RYSLLAGGKRVRP+LC+A C+LVGG E+ AM AAC++EMIHT SLIHDDLPCMDN  LRRGKPTNH +YGE
Sbjct:   11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGE 168          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.075e-40
Identity = 73/106 (68.87%), Postives = 92/106 (86.79%), Query Frame = 2
Query:  482 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            TF+F  YM+ KA +VN+AL+ A+ + +P+KIHE+MRY++LA GKRVRP+LCLA+C+LVGG E+ AMPAAC++EMIHTMSLI DDLPCMDND LRRGKPT H +YGE
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGE 187          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.293e-34
Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 2
Query:  416 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 799
            RPR  + +SA++ +  +        S   +F SYM  KA ++N+ALD +       V L +PV ++H++MRY+LL GGKRVRP+LCL AC+LVGG ES AMPAAC++EMIH  SLI DDLPCMD+D LRRGKPTNH ++GE
Sbjct:    2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGE 142          
BLAST of CX043533 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.211e-33
Identity = 67/144 (46.53%), Postives = 96/144 (66.67%), Query Frame = 2
Query:  386 TTLPVSLASQRPRRP------VSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLA-GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 796
            + +P+S     P +P      +S +A+++   +   S  FD ++Y     + +NQ LD A+ +K P  I+E+MRYS+LA G KR  PV+C+AAC+L GG    A P AC++EM+H  SLIHDDLPCMD+DP+RRGKP+NHT+YG
Sbjct:    6 SAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYG 149          
The following BLAST results are available for this feature:
BLAST of CX043533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GGPPS_HEVBR6.590e-5961.88Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL9.538e-5063.58Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH5.787e-4755.98Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CAPAN4.899e-4653.23Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO2.431e-4557.99Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH2.130e-4152.29Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH1.381e-4053.09Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP2_ARATH3.075e-4068.87Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH3.293e-3453.90Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
GGR_ARATH6.211e-3346.53Geranylgeranyl pyrophosphate synthase-related prot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11G01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11G01-M1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043533 ID=CX043533; Name=CX043533; organism=Citrus sinensis; type=EST; length=842bp
AATCCAAAGTTTTATCTTTGCCCGCTGTTGGTTGGCCTCCCTCCCTCCAC
CGTGCATTTGCGGTTGCCGCTAAATTTCCATCTTTGGTCTAAAGAAAAAA
AAAAGGAAAATGGCTTTGTTTGGTAACATGGTACAATTTGGGCATTTCTG
TTTATGAGTCTCGAAGAAGAAGAAGGAATCGGGAGGATAAAGTGGGAGAG
GCTTACGGCTTGCCTGCCCAGATTGCGTATTCTCGGTTGTCAGTTCTCGC
ACCAGTGTAATCTCCATTTCTTCTTGCCTTACCAAAATGAGTTGCGTCAA
TCTTGCGGCATGGACTCAAACATGCTCAATCTTTAACCAAGCTAGCAGTC
GCAGATCTAACAAAACTCAGCCGTTCCGTACGCTTACAACACTGCCCGTT
TCCTTGGCTTCACAGAGACCAAGGCGCCCCGTTTCGATCTCCGCAGTTCA
AACTCTCGAGGAAAACCCCGCCCCAAGCCCCACTTTCGATTTCAAGTCCT
ACATGATCCAAAAAGCAAGTACCGTCAACCAAGCCTTAGACGCCGCCGTT
TCGCTCAAGGACCCCGTGAAGATCCACGAATCCATGCGATACTCTTTACT
GGCGGGCGGCAAGCGGGTGCGCCCTGTGCTCTGCCTCGCCGCTTGTGACC
TCGTTGGTGGCCACGAGTCCATGGCCATGCCAGCTGCATGCTCTATCGAG
ATGATCCACACCATGTCCTTAATTCACGACGATTTGCCTTGCATGGATAA
CGACCCTCTACGTCGAGGGAAGCCCACGAACCACACGATCTACGGCGAAG
ACGTCGCCGTTTTGGCCGGCGATGCGCTTTTGGCCTATGCTT
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