CX043516

Overview
NameCX043516
Unique NameCX043516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3580 contig Csv1_Contig3580:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043516 vs. ExPASy Swiss-Prot
Match: PP399_ARATH (Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = -2 
Query:  503 EAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE-VRESSESDKFIMSAAVHLYRYAGKEHE 817
            EAE+TI  ++++GIP S +H + LLSA  KAG+M EA R Y +   AGI PD AC RT+LKGYM  G  E+GI  +E+ +R S E D+F+ S    LY+  GKE +
Sbjct:  932 EAEKTITLVKEKGIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAEKGILFYEKMIRSSVEDDRFVSSVVEDLYKAVGKEQD 1037
The following BLAST results are available for this feature:
BLAST of CX043516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP399_ARATH1.687e-1949.06Pentatricopeptide repeat-containing protein At5g27... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11F02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11F02-K3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043516 ID=CX043516; Name=CX043516; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAATTTGTTAATCAATCAACTATATAGAGATGCA
TTCATAAAACTCTATACAATTATTCACATGTTGTACACTTGATTACGGTA
TCCCAGCGTTCGTGTTCATCAACCAGATCACCATATCTTAATGATGCAGG
CTCGTGATCAGCAGCTGTATCAGGCTGCAGCTACTGATTCCCATGCACTG
CATATCCAACGTCTGGAGGCAAATATCAGCGCCGTTTGCAAGAAGCTATC
ACCAGTATCTCTGTACTTTCAGACCTCATATACCACCAGAGGTACAATCC
AATGACCATTTCCCCGACCAGTAAACTATTACCTGGCCTTTCTTCATCAT
AAGTCCTTTGCCTCAAATCAAAATATCCAGAATTCAGTTGTATTAAGTGT
TAGATACAATAGGATCTATGAGGGTTTTATCTTTGATCCAACTTCCAGGT
TCTTCAGGAATGGTATTCTCACAGAATTCATTGAATCCAAAATATCATTC
GCTTCATGTTCCTTCCCTGCATACCGGTATAAATGCACAGCCGCACTCAT
GATAAACTTGTCTGATTCTGAGGACTCTCTGACCTCTTCAAAAAGGTTTA
TTCCTTCCTCAATGTATCCATGGTCCATGTAACCTTTCAGCATTGTCCGA
TAACAAGCAAGGTCAGGAATTATACCAGCTGCGAGTGATTCATTGTAAAC
CCTTGTAGCCTCTGCCATCAGACCCGCCTTAGAAAAAGCAGATAGCAAGT
GGTTGACATGTGTGCACGAAGGGGGAATCCCTTGCTTCTGCATAGAATTT
ATTGTTTCCTCTGCTTCT
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