CX043514

Overview
NameCX043514
Unique NameCX043514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX043514 vs. ExPASy Swiss-Prot
Match: PGIP3_PHAVU (Polygalacturonase inhibitor 3 OS=Phaseolus vulgaris GN=PGIP3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = -2 
Query:  607 LDFLDLSRNRFFGGIPSSLSQLRGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNE-LCGLPLP 798
            L+ LDL  NR +G +P  L+QL+ L  +++S+NNL G+IP G  LQ F+ S YA N+ LCG PLP
Sbjct:  275 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 339
[Close]
BLAST of CX043514 vs. ExPASy Swiss-Prot
Match: PGIP2_PHAVU (Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris GN=PGIP2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = -2 
Query:  607 LDFLDLSRNRFFGGIPSSLSQLRGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNE-LCGLPLP 798
            L+ LDL  NR +G +P  L+QL+ L  +++S+NNL G+IP G  LQ F+ S YA N+ LCG PLP
Sbjct:  275 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 339
The following BLAST results are available for this feature:
BLAST of CX043514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PGIP3_PHAVU8.070e-1150.77Polygalacturonase inhibitor 3 OS=Phaseolus vulgari... [more]
PGIP2_PHAVU8.070e-1150.77Polygalacturonase inhibitor 2 OS=Phaseolus vulgari... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11F01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11F01-K1-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043514 ID=CX043514; Name=CX043514; organism=Citrus sinensis; type=EST; length=799bp
CCCCCCCTCTTTTTTAGTAAGGATTGGTACATATTAATTGAAGAAAGAAG
AAAGAAAAAATCTACGACTGTCCAGTAAAAGTTGATGGTGCTATCTTAAA
AAAAATGTGCAAACATTGATCCATCAGCTGAAATCAAGCACGAATATATA
AAGCATGGAAGATGGGCTAAACAGAGCAGCCATACACAAGATCCTATAAG
CAGACACTCGATAACAAATACCATATGAAAAGACTATATTATTCTCTCTT
GTAGGAAGCTTCAAACCATTATCAATTGAGCTATTTGTACAGTAAGGAAC
ACAATGCCATCAGTGAGAGACGTAATACATAGCTGCCAATTAGCTCCTTA
ACCTTCTTTGCAATTTGGCAATATTCACCACCGCTGTCACGTAAAACCAA
TTTTCGATACCAGTCAAGAAGTTGTAGTAACGATGTCTCCACGAGCTTTT
CACTAATAAAGTGCCACAGAATCCCCAGAATCCAACAAAGAAACCGAGAA
TCAAGCTCACGTAAAATCCGAGAGTTATAAATTGATCTTCCTCTTCTGGA
GTGTTTGCATCATCTTTGCCTGGACGCGGAGCTAAGTCTTCATCTGGACA
CTTATTTGGGAGTGGGAGGCCGCAAAGTTCATTTCCAGCATACGTTGAAG
CATTGAAGCTCTGGAGTTGAGTGCCCGATGGAATTTTGCCGGACAAGTTG
TTGTATGACAAGTCCATGACGCTAAGACCCCTTAACTGAGAAAGGCTTGA
AGGAATGCCTCCAAAAAACCGATTTCTAGACAAATCGAGGAAATCCAAT
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