CX043511

Overview
NameCX043511
Unique NameCX043511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3578 contig Csv1_Contig3578:1..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.363e-38
Identity = 72/85 (84.71%), Postives = 81/85 (95.29%), Query Frame = -2
Query:  169 EARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQSPEGGACIPNLCS 423
            +ARNYTYSLEVGG+GRK TWEGTPRS+RDSH+KVRDSHDGLIIQRNMALFFSGGD+KELKLRVTGRIWKEQQ+P+ G CI ++CS
Sbjct:  224 DARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDSGVCITSMCS 308          
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.768e-37
Identity = 75/85 (88.24%), Postives = 77/85 (90.59%), Query Frame = -2
Query:  175 EARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ--SPEGGACIPNL 423
            EARNY YSLEVGG GRKL WEGTPRS+RDSH+KVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ     GGACIPNL
Sbjct:  241 EARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQQSGEGGGACIPNL 325          
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.276e-36
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = -2
Query:  169 EARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQSPEGGACIPNLCS 423
            +AR+Y+YSLEVGG+GRKLTWEGTPRSIRDSH+KVRDS+DGLIIQRNMALFFSGGDRKELKLRVTG+IWKEQ SP+ G  IPNL S
Sbjct:  242 DARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKEQHSPDSGLSIPNLSS 326          
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.557e-33
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  520 SGQINSNSVLVALLDSHYTXXXXXXXXXXXXQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATEST---QHHTLSSDSVELTS 852
            SGQINSNSVLVALLDS YT            Q LEDAVG+H+ITIFAP+NEALERDLDPEFKRFLLEPGNLKSLQTLL+ HI+  R+  N+  +E +   +HHTL +D V L++
Sbjct:   39 SGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRLSN 152          
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.133e-31
Identity = 72/115 (62.61%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  505 NNATHSGQINSNSVLVALLDSHYTXXXXXXXXXXXXQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATEST---QHHTLSSDSV 840
            +N T SGQINSNSVLVALLDS YT            Q LEDAVG+H+ITIFAP+NEALERDLDP+FKRFLL+PGNLKSLQTLLL HI+  R+  N+   E++   +H TL  D V
Sbjct:   31 HNITGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQV 145          
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.181e-28
Identity = 68/115 (59.13%), Postives = 81/115 (70.43%), Query Frame = 1
Query:  505 NNATHSGQINSNSVLVALLDSHYTXXXXXXXXXXXXQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELT 849
            +N    GQINSNSVLVALLDSHYT            Q LE+AVGKH+ITIFAP+N+ALER+LDP FK FLLEP NLKSLQ+LL+ HI+  RI   +  + S  H TLS+D + LT
Sbjct:   26 DNKPVPGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWPSLSHHHRTLSNDHLHLT 140          
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.720e-28
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  520 SGQINSNSVLVALLDSHYTXXXXXXXXXXXXQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTS 852
            SGQINSNSVLVALLDSHYT            Q LE+AVG+H+ITIFAP+N+ALE++LDPEFK FLL+P NLKSLQ+LL+ HI+  RI   + ++    H TLS+D +  T+
Sbjct:   27 SGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITSPQFSSAVVSHRTLSNDHLHFTN 137          
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.414e-27
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = -2
Query:  211 EARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 423
            EA+ ++YSLEVG +GRKLTW+G PRSIRDSH+KVRDS DGLII RN+AL+FSGGDR+ELKLRVTGRIWKE+
Sbjct:  238 EAKKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308          
BLAST of CX043511 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.758e-26
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = -2
Query:  211 EARNYTYSLEVGGNGRKLTWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 423
            EA+ ++YSLEVG + RKLTW+G PRSIRDSH+KVRDS DGLII RN+AL+FSG D++ELKLRVTGRIWKE+
Sbjct:  235 EAKKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRIWKEE 305          
The following BLAST results are available for this feature:
BLAST of CX043511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SINA5_ARATH1.363e-3884.71E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA3_ARATH9.768e-3788.24E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA4_ARATH1.276e-3684.71E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
FLA17_ARATH8.557e-3364.04Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA18_ARATH6.133e-3162.61Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA16_ARATH2.181e-2859.13Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA15_ARATH3.720e-2857.66Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
SINA2_ARATH1.414e-2778.87E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINA1_ARATH7.758e-2674.65Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11E09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11E09-I17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043511 ID=CX043511; Name=CX043511; organism=Citrus sinensis; type=EST; length=868bp
GGCCCCCCCCTGCAATGAAAAAGGAAGCTTATTCACAATTTATAACAGCT
TTAAGCCTCCAGCATCCATACATATTTCAGATATCCTCAGTAATTTCTGC
ATCTGCTAATAATATTACAACAAATTCTGCAAGTGGGCCTGGACATGCAT
GAGATCCAACGGTCGCTAACTACAGAGGTTGGGTATGCAGGCGCCGCCTT
CTGGGCTCTGCTGTTCTTTCCATATCCGTCCGGTAACTCGCAGCTTCAAC
TCTTTCCGGTCCCCTCCAGAGAAAAAAAGAGCCATATTACGCTGTATAAT
TAGACCATCATGACTGTCTCTAACCTTCTTGTGACTGTCTCTGATGCTCC
GTGGGGTGCCTTCCCAAGTAAGCTTCCGTCCATTTCCTCCAACCTCTAGA
CTGTAGGTGTAATTCCTGGCTTCGAAACTCGGAAACTCATTTCATTTCTT
CTTTTAATTTTTATATTCCCTCTCCAACTCACGGCTTCAATGCAATTGCA
AGGAAACAACGCAACTCACTCCGGCCAAATCAACTCCAACTCAGTCCTGG
TCGCACTTCTCGACTCGCATTACACCGAACTCGCTGAGCTCATCGAGAAA
GCTCTCCTCTTGCAGCCACTCGAAGATGCTGTCGGCAAGCACAGCATCAC
CATTTTCGCTCCCAAAAATGAAGCTTTGGAGCGGGATCTCGATCCCGAGT
TCAAGCGCTTCTTGCTCGAGCCAGGCAACTTGAAGTCTCTTCAGACGCTT
TTGCTTCATCACATTGTCTCCACGCGAATAGAGTTAAACCGGACTGCCAC
CGAGTCAACTCAGCATCATACACTGTCCAGTGATTCAGTCGAGCTAACGA
GTCATGATTCGGGTGATA
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