CX043497

Overview
NameCX043497
Unique NameCX043497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 8.774e-109
Identity = 192/203 (94.58%), Postives = 198/203 (97.54%), Query Frame = -1
Query:  214 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDV-GGGQQQRSSGCEC 819
            RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF+NLNNWREEFLIQA+PSDPENFPFVVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+ AF+CIAKNAL NEP+EE YLPDTIDV GGG+QQRSSGCEC
Sbjct:    5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNEPEEEIYLPDTIDVAGGGRQQRSSGCEC 207          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 7.428e-108
Identity = 190/203 (93.60%), Postives = 198/203 (97.54%), Query Frame = -1
Query:  214 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDV-GGGQQQRSSGCEC 819
            RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF+DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV+DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECIA+NALKNEP+EE YLP+TIDV  GG+ QRS+GCEC
Sbjct:    5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNEPEEEIYLPETIDVASGGRPQRSTGCEC 207          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 3.229e-103
Identity = 183/201 (91.04%), Postives = 191/201 (95.02%), Query Frame = -1
Query:  220 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTID-VGGGQQQRSSGC 819
            RR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+NFPFV+LGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG NVE AF+CI KNALKNEP+EE Y+PDT+D VGG + QRSSGC
Sbjct:    5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALKNEPEEELYVPDTVDVVGGNRAQRSSGC 205          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 5.156e-101
Identity = 177/202 (87.62%), Postives = 189/202 (93.56%), Query Frame = -1
Query:  214 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 819
            RR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSFDNLNNWREEFLIQA+PSDPENFPFVV+GNK D+DGGNSRVVSEKKA+AWCA+KGNIPYFETSAKEG NVE AF+ IAK+ALK+  +EE YLPDTIDVG   Q RS+GCEC
Sbjct:    5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSSQPRSTGCEC 206          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.128e-98
Identity = 171/203 (84.24%), Postives = 188/203 (92.61%), Query Frame = -1
Query:  214 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGG-QQQRSSGCEC 819
            RR LLK+IILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKE+QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSF++LN WREEFLIQASP+DP+NFPFV+LGNK DVDGG+ RVVSEKKAKAWC SKGNIPYFETSAK+G NVE AF+CIAKNA++NEP+EE YLPDTID+ G  + Q SS CEC
Sbjct:    5 RRKLLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPFVLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIAKNAIQNEPEEETYLPDTIDMAGSTRPQSSSACEC 207          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 7.991e-86
Identity = 151/202 (74.75%), Postives = 172/202 (85.15%), Query Frame = -1
Query:  214 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 819
            RR LLKVI+LGD+GVGKTSLMNQYV++KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSFD L+NW EEFL QA+P DP +FPF++LGNK D+DGGNSRVVSEKKAK WCASKGNIPYFETSAKE FNV+AAF CIAK AL NE +++ Y     +    + ++ SGC C
Sbjct:    5 RRTLLKVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC 206          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.780e-85
Identity = 151/202 (74.75%), Postives = 171/202 (84.65%), Query Frame = -1
Query:  214 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 819
            RR LLKVI+LGDSGVGKTSLMNQYV++KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD L NW EEFL QA+P DP  FPF++LGNK D+DGGNSRVVSEKKAK WCA+KGNIPYFETSAKE +NV+AAF CIAK AL NE +++ Y     +    + ++ SGC C
Sbjct:    5 RRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC 206          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.848e-83
Identity = 145/201 (72.14%), Postives = 174/201 (86.57%), Query Frame = -1
Query:  220 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVG-GGQQQRSSGC 819
            +R LLKVIILGDSGVGKTSLMNQYV +KF+ +YKATIGADFLTKE++ +D+  T+QIWDTAGQERFQSLG AFYRGADCCVLV+DVN  KSFD+L+NWR+EF+IQA P DP+NFPF+VLGNK D +GG+SR VSEKKAKAWCASKG+IPYFETSAKE  NVEAAF CI +NAL+NE +EE ++PD +D+     Q++ +GC
Sbjct:    5 KRRLLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFMPDAVDMNTTATQRKRAGC 205          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.724e-80
Identity = 143/202 (70.79%), Postives = 170/202 (84.16%), Query Frame = -1
Query:  214 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 819
            +R +LK+IILGDSGVGKTSLMNQYV +KF+ +YKATIGADFLTKE++ +D+  T+QIWDTAGQERFQSLG AFYRGADCC+LV+DVN  KSFD+L+NWR+EF+IQA PSDP+NFPFVVLGNK D  G N R V+EKKAKAWCASKG+IPYFETSAKE  NVEAAF CI +NAL+NE +EE ++PD +D+     QR  G  C
Sbjct:    5 KRRVLKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGNKIDEVGVN-RQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFVPDAVDMNTSATQRKRGGCC 205          
BLAST of CX043497 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.252e-80
Identity = 147/203 (72.41%), Postives = 166/203 (81.77%), Query Frame = -1
Query:  214 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYL-PDTIDVGGGQQQRSSGCEC 819
            RR LLKVIILGDSGVGKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP  FPF++LGNK D+DGGNSRVVSEKKA+ WCA KGNI YFETSAKE +NV+ +F CI K AL NE  ++ Y  PDT    G   ++  GC C
Sbjct:    5 RRTLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANERDQDIYFQPDT----GSVPEQRGGCAC 203          
The following BLAST results are available for this feature:
BLAST of CX043497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7_PRUAR8.774e-10994.58Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB7_GOSHI7.428e-10893.60Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RAB7_CENCI3.229e-10391.04Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
RAB7_PEA5.156e-10187.62Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]
RAB7_MESCR3.128e-9884.24Ras-related protein Rab7A OS=Mesembryanthemum crys... [more]
RAB7_VIGAC7.991e-8674.75Ras-related protein Rab7 OS=Vigna aconitifolia PE=... [more]
RAB7_SOYBN1.780e-8574.75Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
YPTC5_CHLRE4.848e-8372.14GTP-binding protein YPTC5 OS=Chlamydomonas reinhar... [more]
YPTV5_VOLCA1.724e-8070.79GTP-binding protein yptV5 OS=Volvox carteri GN=YPT... [more]
RAB7_ARATH2.252e-8072.41Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11D11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11D11-G21-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043497 ID=CX043497; Name=CX043497; organism=Citrus sinensis; type=EST; length=819bp
TTACAAAGCATAAAACAATTAGACTCCAGATGATATAGAAAAAGAAAGGG
TAAAAACAATGCAAACATAGTGGAATACAGTCCAAGGCACTAGTATTGTA
CATTGAATTTGATTAATATTCCCTGCTTTATTGCTGCATGGCAAATTGAT
CTGACGGTGACCTCACTTGCATTCCACCAGTTACAACAGAACCACCTATG
AGCCCCAGTTTTAACATTCACAACCCGAAGATCTCTGCTGCTGTCCACCG
CCGACATCAATGGTGTCCGGAAGATAATCTTCTTCTTGAGGTTCATTTTT
CAGAGCGTTTTTGGCTATACACTCAAAAGCAGCTTCTACATTGAAACCTT
CTTTGGCAGATGTTTCAAAATAAGGGATATTCCCTTTGGAAGCACACCAT
GCCTTTGCCTTCTTCTCAGACACCACTCGACTATTGCCACCATCAACATC
GGTCTTGTTCCCCAATACAACAAATGGAAAGTTTTCAGGATCAGAAGGGC
TGGCCTGAATCAGGAACTCCTCTCGCCAATTGTTGAGATTATCAAATGAT
TTCATGACATTCACATCATACACAAGAACACAACAGTCTGCGCCACGGTA
GAAAGCCACTCCAAGACTTTGAAACCTTTCCTGTCCAGCTGTATCCCATA
TCTGCAAAGTGAAAAGCCTGTCCTCAAATTGGACTTCTTTGGTCAAGAAA
TCTGCCCCAATGGTTGCTTTATACTGGTTACTAAACTTGCGGTTCACATA
TTGATTCATCAAAGAAGTCTTCCCAACCCCGCTGTCTCCGAGGATTATAA
CTTTGAGGAGCATGCGTCT
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