CX043485

Overview
NameCX043485
Unique NameCX043485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043485_ssr765 microsatellite CX043485_ssr765:765..776. BLAST: Citrus ESTs to Prunus persica proteins V1
CX043485_ssr789 microsatellite CX043485_ssr789:789..803. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5981 contig Csv1_Contig5981:254..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043485 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 6.119e-57
Identity = 108/157 (68.79%), Postives = 128/157 (81.53%), Query Frame = -2 
Query:  269 TPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXGEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 736
            T DFP+QK  G +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+L+K               GEQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:   42 TLDFPAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197
[Close]
BLAST of CX043485 vs. ExPASy Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.240e-16
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = -2 
Query:  248 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 682
            V  +FC SC YR       ++L  ++PGID+   NYPP + + + ++               G   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + ++SKL+ GR P   EL   +   LA  R
Sbjct:   83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHLAIRR 227
[Close]
BLAST of CX043485 vs. ExPASy Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 47/148 (31.76%), Postives = 67/148 (45.27%), Query Frame = -2 
Query:  260 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLSKXXXXXXXXXXXXXXXGEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 703
            G     T+   +C SC YR        +L  ++P I V   NY PP     LSK                   F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND  V+SKL+ GRFP    L  ++   L
Sbjct:   37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHL 184
The following BLAST results are available for this feature:
BLAST of CX043485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SELT_ARATH6.119e-5768.79SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
HSP6_HETGL5.240e-1631.03Putative esophageal gland cell secretory protein 6... [more]
SELT_DROME1.864e-1331.76SelT-like protein OS=Drosophila melanogaster GN=CG... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11D03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11D03-G5-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043485 ID=CX043485; Name=CX043485; organism=Citrus sinensis; type=EST; length=833bp
TGATAGCATCGAGTAAAGATAAGGGCTGAAAATCAGAAATTTCAATCCTG
CTGGAAAAGTAATTGTTGTCGACATGTTTTACAGAGCCAATGTTCATTAT
GATAGTGGCATCAAAATCTGTTTATATATTTGCCATAACAACCTAGATAA
TGAAATCTTGTACAAGGCTCTCAGTCAATCCTTTGATTCCAACCCTCAAT
GTCCAGTGAATGAACTAGGACCATACACTTCCAACACCATCCACAAGTCT
TGATGAAGCCAATTGTTTGGCAACAAGATCTTTTAGCTCAATCTCGCCTG
GAAACCTCCCCTCCTTCAGTTTAGAGAAGACCAAGTCATCATTACAGTAA
ACTTCAAAAGCCCCAGAGCTTTGGAGGAAGGACTGCAAAAAGTTTCCAAT
AAGCCAGGTAGATGCTATGGACCCAAACCTATTGGCACGCAGCGAATAAT
ACCATGGAGGTGGTGTCATTCCCAGCATCGGAAAAATCTGTTCGCCTGCC
ACTACGATCCCAATAACCCCTATCTGAACAGCAGGCACCACTTTAGAAAG
TAGACGCTTTGGCAGGGGTGGGGGATAATTTGCAAGGACCACATCAATCC
CAGGAAACTGAGTCTCCAACATCCTTTTCATTGTTATTGCAGTGCCCCTA
TAAGAGCAAGAAGCACAAAAGTTGATATTAACAGTACTGCCATACCCAAT
TCCTCCGACAATTTTCTGTGAAGGAAAGTCTGGGGTTAGGTTTTCCGAAG
GTATAGGCGGTTTATGGTGGTGGTGGGAAGCGGATTTTGGCGGCGGCGGC
GGCGGAGGAGTGAAAAGATTTAAGAGGTCGCTG
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