CX043484

Overview
NameCX043484
Unique NameCX043484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8278 contig Csv1_Contig8278:20..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 7.249e-55
Identity = 119/221 (53.85%), Postives = 143/221 (64.71%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKR-PTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSP 815
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K  P+G  + ++ AP+                                                   VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A +P
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPT----------SGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANP 212          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 8.033e-46
Identity = 106/223 (47.53%), Postives = 124/223 (55.61%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSPT 818
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K  +     TS AP+                                                    YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ +  V P +  P N   A+  T
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQAT 225          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.957e-41
Identity = 96/222 (43.24%), Postives = 126/222 (56.76%), Query Frame = 3
Query:  162 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEG-STTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSP 815
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVLKD+T+L ENKV E  F+V+ML+K+K     G ++  T+                         +                            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A  +P
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPASPIPAQEQPAAQTD-----------TYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAP 215          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.124e-39
Identity = 93/212 (43.87%), Postives = 118/212 (55.66%), Query Frame = 3
Query:  162 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNG 797
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVLKD+TTL ENKV E  F+V+ML+K+K  +  G + ST PT                                                    YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   + P     G G
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPS-STQPTSTTTSTISSTTLAAPSTTQSIAV-----------PASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVG 203          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.231e-29
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 3
Query:  579 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSP 815
            VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN P
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPP 252          

HSP 2 Score: 127.102 bits (318), Expect = 1.165e-28
Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTK 428
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K  +   S+ S   ++
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASSASAGTSQ 93          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.067e-24
Identity = 75/230 (32.61%), Postives = 107/230 (46.52%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI-----PEQAEVQ--PVARAPGNGQAANSP 815
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G  +    +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GI     PE   VQ   V+  P    A  +P
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENP 231          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.925e-23
Identity = 69/206 (33.50%), Postives = 99/206 (48.06%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE 764
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G    +  +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFPSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE 207          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.515e-23
Identity = 76/230 (33.04%), Postives = 106/230 (46.09%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGH---AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGI-----PEQAEVQPVARA--PGNGQAANSP 815
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + +  + E +FVV+M+TK K   G  +    +PT                                                  G  G    AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GI     PE   VQ   RA  P    A  +P
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKAKAGQGISAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQRAEQPATEAAGENP 231          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTTS 413
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T     T+
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSAVPATT 88          
BLAST of CX043484 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  156 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 392
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
The following BLAST results are available for this feature:
BLAST of CX043484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23D_ARATH7.249e-5553.85Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ8.033e-4647.53Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH5.957e-4143.24Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH1.124e-3943.87Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23C_ARATH5.231e-2980.00Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23A_HUMAN5.067e-2432.61UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_BOVIN1.925e-2333.50UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RD23A_MOUSE2.515e-2333.04UV excision repair protein RAD23 homolog A OS=Mus ... [more]
RD23B_RAT7.333e-1545.35UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE9.578e-1548.10UV excision repair protein RAD23 homolog B OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11D02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11D02-G3-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043484 ID=CX043484; Name=CX043484; organism=Citrus sinensis; type=EST; length=818bp
CTTCTATATGCTTCTTAACTTGTGCTTCGGTTTTCTCTCTCCGACTGTAT
CAATTATAGATAGACATTGAAAAGACCTTGCGGATCGGAAAACCAAATAA
AATAGTTGAATTCGAGAGACCCAACGGAACGTAGAAAAAGAAGAAGATGA
TGAAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGTG
AAACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAGAAACTGTTCA
AGGATCGGATGTTTATCCTGCTGCACAACAGATGCTGATTTATCAGGGGA
AAGTCCTCAAAGATGATACTACACTGGAAGAGAACAAAGTAGCTGAAAAT
AGTTTTGTTGTTATTATGTTAACAAAGAATAAGAGACCAACTGGTGAAGG
TTCAACTACGTCAACTGCGCCTACAAAGGCTCCCCAGTCAAGTGCCCCAA
CCCCTGCAGTGACCCCAGCAACAGCTCCTCAGACTGCCGTGCCAATCTCT
ACAGAGCCTACACCTGCTCCTACTCCTGCTCCTGCTTCTGCTTCTGTGTC
ATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGCTGCATCTA
ATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGATTCTTGAT
ATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTGCTCTTCGAGC
TGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTATATTCTGGTATAC
CTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCCTGGTAATGGACAA
GCTGCTAACTCTCCAACT
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