CX043480

Overview
NameCX043480
Unique NameCX043480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8536 contig Csv1_Contig8536:50..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 401.364 bits (1030), Expect = 3.161e-111
Identity = 188/213 (88.26%), Postives = 204/213 (95.77%), Query Frame = -3
Query:  173 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 811
            KKAHLMEIQ+NGG++A KVD+ Y FFEK+IP+DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+YK+GK+ QESH+A TEFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTT EK +++G+LKA
Sbjct:  177 KKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 389.808 bits (1000), Expect = 9.516e-108
Identity = 181/211 (85.78%), Postives = 201/211 (95.26%), Query Frame = -3
Query:  179 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRL 811
            KKAH+MEIQ+NGG++AQKVDFAY FFEKQIPI+AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKKIY+LGK   E+H+AMTE+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  177 KKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 387.882 bits (995), Expect = 3.616e-107
Identity = 179/210 (85.24%), Postives = 199/210 (94.76%), Query Frame = -3
Query:  182 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGR 811
            KKAHL EIQ+NGG +A+KVD+A   FEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK  QE+HSAMTE+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKFID +S  GHGRFQT+QEKAK+YGR
Sbjct:  177 KKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 9.583e-84
Identity = 143/215 (66.51%), Postives = 179/215 (83.26%), Query Frame = -3
Query:  176 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA---SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 811
            KKAH+MEIQ+NGG+VA+KVD+A    EKQ+P+D+VF +DEMID IGVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY+LGK+    +   +  T++D TEK + PMGGFPHYG+VN+D+++I+GCCVG KKR +TLR+SL+ QT R A E+I LK+IDTSSKFGHGRFQT  EK  + G+LK
Sbjct:  176 KKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.295e-80
Identity = 143/218 (65.60%), Postives = 177/218 (81.19%), Query Frame = -3
Query:  176 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 811
            KKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+FTVARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  176 KKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 298.13 bits (762), Expect = 3.768e-80
Identity = 142/218 (65.14%), Postives = 177/218 (81.19%), Query Frame = -3
Query:  176 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 811
            KKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  176 KKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 4.922e-80
Identity = 142/218 (65.14%), Postives = 177/218 (81.19%), Query Frame = -3
Query:  176 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 811
            KKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  176 KKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 297.36 bits (760), Expect = 6.428e-80
Identity = 141/218 (64.68%), Postives = 171/218 (78.44%), Query Frame = -3
Query:  176 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE------SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 811
            KKAH+MEIQ+NGGS+  KV +A    EK I +  VF +DEMID +GVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKKIY++G            ++A TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R ALE+IKLKFIDTSSK GHGRFQT  +K  + G LK
Sbjct:  176 KKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 6.428e-80
Identity = 141/218 (64.68%), Postives = 176/218 (80.73%), Query Frame = -3
Query:  176 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 811
            KKAHLME+QVNGG+VA+K+D+A    E+Q+P+  VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  176 KKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of CX043480 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.443e-79
Identity = 137/218 (62.84%), Postives = 178/218 (81.65%), Query Frame = -3
Query:  167 KKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 811
            KKAHL+EIQVNGG++ QKVD+A    EKQ+ +D VF +DEMID IGVT+G G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++   +  ++  TEFD T+K ITPMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  176 KKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
The following BLAST results are available for this feature:
BLAST of CX043480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_ORYSJ3.161e-11188.2660S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH9.516e-10885.7860S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL32_ARATH3.616e-10785.2460S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_TOXCA9.583e-8466.5160S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_MOUSE1.295e-8065.6060S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_RAT3.768e-8065.1460S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN4.922e-8065.1460S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_DROME6.428e-8064.6860S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_BOVIN6.428e-8064.6860S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_CAEEL2.443e-7962.8460S ribosomal protein L3 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11C11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11C11-E21-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043480 ID=CX043480; Name=CX043480; organism=Citrus sinensis; type=EST; length=813bp
AAGATGTATTAACGCGCAAAAAAGAAACCATGCACAAATGAAGTTTCCAA
GAACTGCCAGTGTAGCCATAGCCATATTAATTCAAAATAGAGACTAGAAT
GACCAAAAATCTTAGATGTTCAAAACTACCCTGAAACCAAAGGCAATCTC
TTCTTCAACTTGGCCAAAATCAAGCCTTGAGCCTTCCATAGTACTTGGCC
TTCTCCTGCGTTGTCTGGAACCGACCATGGCCGAACTTGGAGGATGTGTC
AATGAACTTGAGCTTAATCTCCTCCAATGCAAGCCTAGACGTCTGCTTCA
GTAGGGACTGCCTTAACGTCACAACACGCTTCTTAGGTCCAACACAGCAG
CCCTTGATCAGCAGGTAATCTTCATTGACTACACCATAGTGGGGGAAGCC
TCCCATTGGGGTGATATCCTTCTCCGTCCTGTCAAATTCAGTCATGGCAG
AATGAGACTCCTGGCTGGCCTTCCCAAGCTTGTAAATTTTCTTGTTCATC
TCTGTACGGTGATGGTAGCCGTTCTGCCCAGCTCTAGCAACGGTAAAGGA
GACCCTAGCCGGATGCCAGGCACCAATACAAGCAACCTTGCGTAGACCAC
GGTGAGTCTTACGAGGGAGACGAGTAACACCCCAACGAGTAACAACACCC
TCATATCCCTTACCTTTGGTCACACCAATAATGTCAATCATCTCATCTTT
CTGGAACACAGCATCAATAGGAATCTGTTTCTCGAAGAAACCATAAGCAA
AGTCAACCTTCTGGGCAACTGATCCACCATTGACCTGGATCTCCATCAGA
TGGGCCTTCTTCT
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