CX043477

Overview
NameCX043477
Unique NameCX043477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3572 contig Csv1_Contig3572:1..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC8_ARATH (Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.897e-68
Identity = 112/193 (58.03%), Postives = 145/193 (75.13%), Query Frame = -1
Query:  311 LGLGLEQCPANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTN--TNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +GLGL+ CPA   C GP  QR + S+NN +F  P  +S+ +AYF+N+ G+Y  +FPNQPP+KFDYT      +NDM ++FP + TSVK ++FNSTVE+VLQNTA+I+ ESHPMHLHG++FYVL  GFGNY+  RD++  NL NPQ  NT+ VP GGW V+RF ANNPGVW  HCH D HLP+G+ + FIV+NG
Sbjct:  357 MGLGLDPCPAGTKCIGPLGQRYAGSLNNRTFMIPERISMQEAYFYNISGIYTDDFPNQPPLKFDYTKFEQRTNNDMKMMFPERKTSVKKIRFNSTVEIVLQNTAIISPESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGVWLFHCHMDAHLPYGIMSAFIVQNG 549          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC7_ARATH (Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.784e-68
Identity = 123/192 (64.06%), Postives = 148/192 (77.08%), Query Frame = -1
Query:  311 LGLGLEQCPANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSN-DMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +GLGLE C  N TC      + SASM+NHSF  P  LSIL+A F +V G++  +FP+QPPVKFDYTN NV+  +  LLF  K+TS K+LKFN+TVE+VLQN ALIA ESHPMHLHG++F+VLAQGFGNY+ SRD    NLV+PQ RNT+AVP+GGWAVIRF ANNPG W  HCH DVHLP+GL   F+V+NG
Sbjct:  364 IGLGLEACADNTTCP-----KFSASMSNHSFVLPKKLSILEAVFHDVKGIFTADFPDQPPVKFDYTNPNVTQTNPGLLFTQKSTSAKILKFNTTVEVVLQNHALIAAESHPMHLHGFNFHVLAQGFGNYDPSRDRSKLNLVDPQSRNTLAVPVGGWAVIRFTANNPGAWIFHCHIDVHLPFGLGMIFVVKNG 550          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC9_ARATH (Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.542e-66
Identity = 109/194 (56.19%), Postives = 144/194 (74.23%), Query Frame = -1
Query:  311 LGLGLEQCPANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTN---VSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +GLGL+ CP+NA C GP  QRL+ S+NN +F  P  +S+ +AYF+N+ GVY  +FP+QPP+KFD+T       ++DM ++FP + TSVK ++FNSTVE+VLQNT ++  ESHPMHLHG++FYVL  GFGNY+  RD++  NL NPQ  NT+ VP GGW V+RF ANNPG+W  HCH D HLP G+   FIV+NG
Sbjct:  358 MGLGLDPCPSNAKCVGPLDQRLAGSLNNRTFMIPERISMQEAYFYNITGVYTDDFPDQPPLKFDFTKFEQHPTNSDMEMMFPERKTSVKTIRFNSTVEIVLQNTGILTPESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGIWLFHCHMDAHLPLGIMMAFIVQNG 551          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.642e-61
Identity = 105/194 (54.12%), Postives = 138/194 (71.13%), Query Frame = -1
Query:  311 LGLGLEQCPAN---ATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +GLGL  CP N     CQGP   R +ASMNN SF  P++ S+LQA+   + GV+  +FP +PPVKFDYT  N+S   SL  P + T +  LK+ S V++VLQ+T ++  E+HP+HLHGYDFY++A+GFGN+N  +D+  FNL +P  RNT+ VP+ GWAVIRF A+NPGVW MHCH D H+ WGLA  F+VENG
Sbjct:  372 IGLGLNNCPKNFRSRRCQGPNGTRFTASMNNVSFALPSNYSLLQAHHHGIPGVFTTDFPAKPPVKFDYTGNNISR--SLYQPDRGTKLYKLKYGSRVQIVLQDTGIVTPENHPIHLHGYDFYIIAEGFGNFNPKKDTAKFNLEDPPLRNTVGVPVNGWAVIRFIADNPGVWIMHCHLDAHISWGLAMAFLVENG 563          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.953e-60
Identity = 104/194 (53.61%), Postives = 141/194 (72.68%), Query Frame = -1
Query:  311 LGLGLEQCPAN---ATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +GLGL+ CP     + CQG    R +ASMNN SF  P++ S+LQA+   + GV+  +FP++PPVKFDYT  N+S   +L  P K T +  LK+ S V++VLQ+T ++  E+HP+HLHGYDFY++ +GFGN+N  +D+  FNLV+P  RNT+AVP+ GWAVIRF A+NPGVW MHCH DVH+ WGLA  F+V+NG
Sbjct:  357 IGLGLDNCPKKFPKSRCQGLNGTRFTASMNNVSFVLPSNFSLLQAHSNGIPGVFTTDFPSKPPVKFDYTGNNISR--ALFQPVKGTKLYKLKYGSRVQVVLQDTNIVTSENHPIHLHGYDFYIVGEGFGNFNPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHIKWGLAMAFLVDNG 548          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC3_ORYSJ (Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.908e-58
Identity = 100/191 (52.36%), Postives = 137/191 (71.73%), Query Frame = -1
Query:  311 LGLGLEQCPANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +G+GL  C     C GP + R +ASMNN SF  P + S+L A+++ + GV+  +FP  PPV+FDYT  NV     L  P   T +  LKF S V++VLQ+T++++ E+HP+H+HGYDFY+LA+GFGN++  +D+K FN V+P +RNT+AVP  GWAVIRF A+NPGVW MHCH DVH+ WGLA  F+VE+G
Sbjct:  362 VGVGLFNCEPGQQCGGPNNTRFTASMNNISFVFPQTTSLLHAHYYGIPGVFTTDFPAYPPVQFDYTAQNVPR--YLWQPVPATKLYKLKFGSVVQIVLQDTSIVSPENHPIHIHGYDFYILAEGFGNFDPKKDAKKFNYVDPPQRNTVAVPTNGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEDG 550          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC24_ORYSJ (Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC24 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.813e-55
Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = -1
Query:  311 SASMNNHSFQAPTSLSILQA-YFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 817
            ++SMNN SF  P + S+L+A Y  ++ GVY  +FP+ PP+ FDYT     ++ +L    K+T VK LK+NSTV+MVLQNT L++ ESHPMHLHG++F+VLAQGFGNYN + D   FNLV+PQ RNT+AVP GGWAVIRF A+NPGVWFMHCHFD HL +GL   F V+NG
Sbjct:  393 ASSMNNASFILPNTTSMLEAMYKGSIDGVYTRDFPDTPPIVFDYTADASDDNATLKHTFKSTKVKTLKYNSTVQMVLQNTRLVSKESHPMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAVIRFVADNPGVWFMHCHFDAHLEFGLGMVFEVQNG 562          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC25_ORYSJ (Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC25 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.673e-55
Identity = 106/193 (54.92%), Postives = 135/193 (69.95%), Query Frame = -1
Query:  311 LGLGLEQC-PANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNV-GGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +GLG+  C P    C        S+SMNN SF  P + S+L+A+F     GVY  +FP+ PPV FDYT    S++ ++ F  K+T VK L++N TVEMVLQNT LIA ESHPMH+HG++F++LAQGFGNY+  R  + FNLV+PQ RNTIAVP GGWAVIRF A+NPG+W+MHCHFD H+  GLA    V +G
Sbjct:  368 VGLGVSLCQPEQLLCNRSAPPVFSSSMNNASFVVPKNTSLLEAHFRREPAGVYTRDFPDTPPVVFDYTGDE-SDNATMQFTTKSTKVKTLRYNETVEMVLQNTRLIAKESHPMHIHGFNFFILAQGFGNYDKRRAERRFNLVDPQERNTIAVPTGGWAVIRFVADNPGMWYMHCHFDAHISLGLAMVLEVLDG 559          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC3_ARATH (Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 4.798e-55
Identity = 104/193 (53.89%), Postives = 127/193 (65.80%), Query Frame = -1
Query:  311 LGLGLEQC--PANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +GLGL  C  P +  CQGP   R +ASMNN SF  P S S++QAY+    G++  +FP  PPV+FDYT  NVS    L  P K T    LK+ S V++VLQ+T+++  E+HPMHLHGY FYV+  GFGN+N   D   FNL +P  RNTI  P GGW  IRF A+NPG WFMHCH D HL WGLA  F+VENG
Sbjct:  364 VGLGLINCANPNSPRCQGPNGTRFAASMNNMSFVLPRSNSVMQAYYQGTPGIFTTDFPPVPPVQFDYTG-NVSR--GLWQPIKGTKAYKLKYKSNVQIVLQDTSIVTPENHPMHLHGYQFYVVGSGFGNFNPRTDPARFNLFDPPERNTIGTPPGGWVAIRFVADNPGAWFMHCHIDSHLGWGLAMVFLVENG 553          
BLAST of CX043477 vs. ExPASy Swiss-Prot
Match: LAC23_ORYSJ (Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC23 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.396e-54
Identity = 105/195 (53.85%), Postives = 135/195 (69.23%), Query Frame = -1
Query:  311 LGLGLEQCPANAT---CQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNV-GGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 883
            +G+GL  C  NAT   C GP   R +AS+NN SF  P+S SILQA+     GGV+  +FP  PPV+FDYT  NVS   +L  P   T V  LK+ S V++VLQ T + A E+HP+HLHGYDFY+LA+G GN++A  D+  FN+ +P  RNT+ VP+ GWAVIRF A+NPGVW MHCH DVH+ WGLA  F+V++G
Sbjct:  359 VGVGLFNC-TNATAQQCGGPNGTRFAASINNVSFVLPSSTSILQAHHHGAPGGVFTADFPASPPVQFDYTAQNVSR--ALWQPVPGTKVYKLKYGSAVQVVLQGTNIFAGENHPIHLHGYDFYILAEGLGNFDAGADTAKFNMEDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVDDG 550          
The following BLAST results are available for this feature:
BLAST of CX043477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
LAC8_ARATH2.897e-6858.03Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=... [more]
LAC7_ARATH3.784e-6864.06Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=... [more]
LAC9_ARATH3.542e-6656.19Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=... [more]
LAC5_ARATH7.642e-6154.12Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]
LAC12_ARATH4.953e-6053.61Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC3_ORYSJ7.908e-5852.36Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 ... [more]
LAC24_ORYSJ2.813e-5560.00Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC25_ORYSJ3.673e-5554.92Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC3_ARATH4.798e-5553.89Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=... [more]
LAC23_ORYSJ1.396e-5453.85Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11C10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11C10-E19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043477 ID=CX043477; Name=CX043477; organism=Citrus sinensis; type=EST; length=883bp
TTTTTTTAAAGAGAAAAAAAAAAGATTAATTACTAATTTTACTGTTATTA
CAATGAAAAATGAACTTAATACATCGGTTACTGGTTACCACCATTATTAC
ATCAATAACAAATCTTTTTTGGAACTTTAACAAATGAATGGAACTGAAAC
ACTTGACAAATTACAAACAATTAATGAATGAAAGCTTTTTATTCAGAAAA
TAGCACAATTGTTTTTAATTTTATTTTTTGTGGAATTAATAATAATGGAT
GAACTTCTAGCACTGGGGAAGGTCAGCCGGTGGAGGAGGCAACATCGTCG
ACGGCGTCGGCCCATTTTCAACAATAAAAGTCGTGGCCAGACCCCACGGT
AAGTGAACGTCAAAGTGGCAGTGCATGAACCAAACACCTGGATTATTTGC
GCGGAATCTGATAACGGCCCATCCACCGATAGGAACAGCAATGGTGTTAC
GCCTCTGTGGGTTGACGAGATTGAAGTTTTTGCTGTCTCTGGAGGCGTTA
TAGTTTCCGAACCCTTGAGCCAATACGTAAAAGTCGTAGCCGTGAAGGTG
CATGGGATGACTCTCCACCGCGATCAACGCTGTGTTTTGCAGGACCATCT
CCACCGTCGAGTTGAACTTCAACATCTTGACGCTCGTTGTTTTTGGAGGA
AACAGCAGTGACATGTCGTTGCTGACGTTAGTGTTTGTGTAGTCAAATTT
GACGGGAGGCTGGTTTGGGAAATTGGGCTCGTAAACTCCACCCACGTTGA
AGAAATATGCTTGTAGAATTGACAAACTTGTGGGGGCCTGGAATGAATGA
TTGTTCATGCTGGCAGAGAGTCTTTGCGAGCCCGGACCTTGACATGTGGC
ATTTGCTGGGCATTGCTCAAGCCCCAATCCTAA
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