DC900227

Overview
NameDC900227
Unique NameDC900227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: ATB15_ARATH (Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.145e-52
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = 3
Query:   24 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 341
            A++CCS+KALPVFTFANQAGLDMLETTLVALQDI+LEKIFDD+GRK L +EFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEE AHCICF+FINWSFV
Sbjct:  731 AIICCSMKALPVFTFANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFVFINWSFV 836          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSJ (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.489e-45
Identity = 83/106 (78.30%), Postives = 97/106 (91.51%), Query Frame = 3
Query:   24 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 341
            ++MCCSLKA PVFTFANQAGLDMLETTL+ALQDI+LEKI DD GRKAL  EFP+IMQQGFA L GG+C+SSMGRPVSYE+AVAWKVL++++T HC+ FMF+NWSFV
Sbjct:  754 SIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEFPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV 859          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSI (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.489e-45
Identity = 83/106 (78.30%), Postives = 97/106 (91.51%), Query Frame = 3
Query:   24 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 341
            ++MCCSLKA PVFTFANQAGLDMLETTL+ALQDI+LEKI DD GRKAL  EFP+IMQQGFA L GG+C+SSMGRPVSYE+AVAWKVL++++T HC+ FMF+NWSFV
Sbjct:  754 SIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEFPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV 859          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: ATHB8_ARATH (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.261e-44
Identity = 85/108 (78.70%), Postives = 98/108 (90.74%), Query Frame = 3
Query:   24 AVMCCSLKAL-PVFTFANQAGLDMLETTLVALQDITLEKIFDDH-GRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 341
            AVMCCSLKAL PVFTFANQAGLDMLETTLVALQDITL+KIFD++ G+K L +EFPQIMQQGF C+ GGIC+SSMGR V+YE+AV WKVLN++E  HCICFMF+NWSF+
Sbjct:  726 AVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMFLNWSFI 833          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSJ (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. japonica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.225e-41
Identity = 76/107 (71.03%), Postives = 94/107 (87.85%), Query Frame = 3
Query:   24 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLN-EEETAHCICFMFINWSFV 341
            A++CCSLKA+PVFTFANQ+GLDMLETTLVALQD+TLEK+FDD GRK L  E P IM+QG AC++GG+C+SS+GR  SYE+AVAWKV++ +   AHCICFMFINW+F+
Sbjct:  762 AILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 868          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: HOX29_ORYSI (Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. indica GN=HOX29 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 3.213e-40
Identity = 75/107 (70.09%), Postives = 93/107 (86.92%), Query Frame = 3
Query:   24 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLN-EEETAHCICFMFINWSFV 341
            A++CCSLKA+PVFTFANQ+GLDMLETTLVALQD+TLEK+FDD GRK L  E P IM+QG AC++GG+C+SS+GR  SYE+AVAWKV++ +   AHCI FMFINW+F+
Sbjct:  755 AILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCISFMFINWTFL 861          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: REV_ARATH (Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.639e-39
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = 3
Query:   18 QXAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEE----TAHCICFMFINWSFV 341
            Q A++CCSLK  PVF FANQAGLDMLETTLVALQDITLEKIFD+ GRKA+ ++F ++MQQGFACL  GIC+S+MGR VSYE+AVAWKV    E      HC+ F F+NWSFV
Sbjct:  731 QDAILCCSLKPQPVFMFANQAGLDMLETTLVALQDITLEKIFDESGRKAICSDFAKLMQQGFACLPSGICVSTMGRHVSYEQAVAWKVFAASEENNNNLHCLAFSFVNWSFV 842          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSJ (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. japonica GN=HOX33 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.303e-38
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 3
Query:   24 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 341
            A++CCSLK  P+FTFAN AGLD+LETTLV LQDI+LE I DD GRKAL +EFP+IMQQGF  L GG+C SSMGR  SYE+AVAWKVL++++  HC+ FM +NW+F+
Sbjct:  750 AILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQQGFTYLPGGVCKSSMGRQASYEQAVAWKVLSDDDAPHCLAFMLVNWTFM 855          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSI (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. indica GN=HOX33 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.303e-38
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 3
Query:   24 AVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 341
            A++CCSLK  P+FTFAN AGLD+LETTLV LQDI+LE I DD GRKAL +EFP+IMQQGF  L GG+C SSMGR  SYE+AVAWKVL++++  HC+ FM +NW+F+
Sbjct:  750 AILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQQGFTYLPGGVCKSSMGRQASYEQAVAWKVLSDDDAPHCLAFMLVNWTFM 855          
BLAST of DC900227 vs. ExPASy Swiss-Prot
Match: ATB14_ARATH (Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.007e-38
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   24 AVMCCSLK--ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKALFAEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 341
            A++CCSLK  A PVFTFANQ GLDMLETTLVALQDI L+K  D+ GRKAL +EFP+IMQQG+A L  G+C SSMGR VSYE+A  WKVL ++E+ HC+ FMF+NWSFV
Sbjct:  745 AILCCSLKTNASPVFTFANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGRMVSYEQATVWKVLEDDESNHCLAFMFVNWSFV 852          
The following BLAST results are available for this feature:
BLAST of DC900227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATB15_ARATH2.145e-5290.57Homeobox-leucine zipper protein ATHB-15 OS=Arabido... [more]
HOX32_ORYSJ1.489e-4578.30Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX32_ORYSI1.489e-4578.30Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
ATHB8_ARATH1.261e-4478.70Homeobox-leucine zipper protein ATHB-8 OS=Arabidop... [more]
HOX29_ORYSJ2.225e-4171.03Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]
HOX29_ORYSI3.213e-4070.09Homeobox-leucine zipper protein HOX29 OS=Oryza sat... [more]
REV_ARATH4.639e-3968.75Homeobox-leucine zipper protein REVOLUTA OS=Arabid... [more]
HOX33_ORYSJ2.303e-3866.98Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
HOX33_ORYSI2.303e-3866.98Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
ATB14_ARATH3.007e-3869.44Homeobox-leucine zipper protein ATHB-14 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionDC900227 VSS Citrus sinensis cDNA clone VS28266 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900227 ID=DC900227; Name=DC900227; organism=Citrus sinensis; type=EST; length=558bp
AAACCTTTGGCATCACACAGNATGCTGTCATGTGCTGCTCACTAAAGGCA
TTGCCTGTTTTCACTTTTGCAAACCAAGCGGGACTTGATATGCTTGAGAC
GACCTTGGTTGCACTGCAAGACATAACCTTGGAGAAGATATTTGATGATC
ATGGGCGGAAGGCTCTCTTCGCGGAGTTCCCCCAGATAATGCAACAGGGC
TTTGCTTGTCTTCAAGGTGGCATCTGTTTGTCAAGCATGGGCAGACCGGT
TTCTTACGAGAGGGCTGTGGCTTGGAAGGTACTTAATGAAGAAGAGACTG
CTCATTGCATCTGCTTTATGTTCATCAACTGGTCATTTGTGTAAAATACT
TTGGACCAGCGAAGGTCTGTATTTTGTTGGATTGTATTATCTTTTGGCCA
TGGAAACCTTGGATACTTAGGACAGATAAGGTTGTTAGGCCTATGTTACT
TCTCTCTAAACTGCTTTGCGTTTGTATTGCTTGGAAGTTATGCTACTAGC
CTATAATCAGTCAATAGATGTGTGAAACTTCCATTTACCTCGTTTTTTTT
TCCTCTAA
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