CX043472

Overview
NameCX043472
Unique NameCX043472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1798 contig Csv1_Contig1798:479..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043472 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = -3 
Query:  220 DPYQRAMARFWAKYSEELMVKAFMALV--LXXXXXXXXXXXXXEGLEKIEGEFKGKSGLLFAEGEGNIGYLELAFGWILYWLPVWEEAGSFQILDPQKFPVINEWSTKFVNHPLIKENLPARDRMLVYFR 603
            DPYQRA+ARFW+K+ ++ +V A    V  +             E L+ +E E K K    F  GE   G +++A  +I +W+P+++E    Q+   +KFP++ +WS +F+NHP + E LP RD +  YF+
Sbjct:   90 DPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKK---FFGGE-EFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFK 215
[Close]
BLAST of CX043472 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = -3 
Query:  220 DPYQRAMARFWAKYSEELMVKAFMALVLXXXXXXXXXXXXXEGLEKIEGEFKGKSGLLFAEGEGNIGYLELAFGWILYWLPVWEEAGSFQILDPQKFPVINEWSTKFVNHPLIKENLPARDRMLVYFR 603
            DPY RA+ARFWAK+ ++ +       +              E L+ ++ E K K    F  G+   G+ ++A   + +WL V+EEA    ++  +KFP   +W  +++N   IKE+LP RD +L ++R
Sbjct:   86 DPYDRALARFWAKFLDDKVPAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKK---FFVGD-KFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAFYR 209
[Close]
BLAST of CX043472 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = -3 
Query:  220 DPYQRAMARFWAKYSEELMVKAFMALVLXXXXXXXXXXXXXEGLEKIEGEFKGKSGLLFAEGEGNIGYLELAFGWILYWLPVWEEAGSFQILDPQKFPVINEWSTKFVNHPLIKENLPARDRMLVYFR 603
            DPY RA+ARFW+K+  + +                      E L+ ++ E K K    F  G+   G+ ++A   + +WL V+EE     ++  +KFP  + W  +++N   +KE+LP+RD +L +FR
Sbjct:   86 DPYDRALARFWSKFLGDKVAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKK---FFVGD-KFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELLAFFR 209
[Close]
BLAST of CX043472 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = -3 
Query:  220 DPYQRAMARFWAKYSEELMVKAFMALVLXXXXXXXXXXXXXEGLEKIEGEFKGKSGLLFAEGEGNIGYLELAFGWILYWLPVWEEAGSFQILDPQKFPVINEWSTKFVNHPLIKENLPARDRMLVYFR 603
            DPY RA+ARFWAK+ ++ +                      E L+ ++ E K K    F  G+   G+ ++A   + +WL V+EE     ++  +KFP  ++W  +++N   + E+LP RD +L +FR
Sbjct:   86 DPYDRALARFWAKFLDDKVAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKK---FFAGD-KFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAFFR 209
The following BLAST results are available for this feature:
BLAST of CX043472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GSTX6_SOYBN1.587e-1735.38Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX1_TOBAC4.046e-1331.25Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_TOBAC5.842e-1229.69Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX2_TOBAC5.842e-1229.69Probable glutathione S-transferase OS=Nicotiana ta... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11C07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11C07-E13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043472 ID=CX043472; Name=CX043472; organism=Citrus sinensis; type=EST; length=608bp
CCCCCCCTTTTTTTTGAATGAAGAAGAGTGAGATAATTTTAACTAATTAA
AGAGTAATTTTATTACAAAATTGAAATAAAGATGCAAAGAAAGAGGAAAA
TAAAATACAAGTCATTACAACACACCACAACACCACCTTTATTAGCACAA
ATATTATTTGATCCATAATTCTTGGATGCTCTATGCCCGGAATAAGGTAA
AGAACTCTTCACTGAGTTTGCGGAAATAGACGAGCATCCGGTCCCTGGCC
GGCAAGTTTTCTTTGATGAGAGGGTGATTCACAAACTTGGTGCTCCATTC
ATTGATGACTGGAAATTTCTGAGGGTCAAGAATTTGAAAGGATCCAGCTT
CTTCCCAAACAGGCAGCCAGTAAAGAATCCAACCAAATGCAAGTTCCAAA
TACCCAATATTGCCCTCTCCTTCAGCAAACAACAAGCCGCTCTTTCCCTT
GAATTCCCCTTCTATCTTCTCCAATCCTTCTGCAAATTCTTTCGCATTTT
TCTCCTTTGCCTCTCCTTTCAAAACCAGAGCCATGAATGCTTTCACCATC
AGTTCTTCTGAATATTTAGCCCAGAAACGAGCCATGGCTCTTTGGTAAGG
GTCTCCCT
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