CX043464

Overview
NameCX043464
Unique NameCX043464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7999 contig Csv1_Contig7999:161..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043464 vs. ExPASy Swiss-Prot
Match: Y4966_ARATH (Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.349e-37
Identity = 64/91 (70.33%), Postives = 79/91 (86.81%), Query Frame = -2 
Query:  418 SYLWRKYADYVYTKWERTLIWDMIEPYRRPKSFTPLVSIYVAAFYTGVIAAAINEQLYKEKYWEDHPGEAVPLMRPTFYGGPWKVYKGDTL 690
            S LWRKYADY Y K+ER  +W+MIEPYRRPK+FT L++IYVAAFYTGVI AA+ EQLYKEK+WE+HPG+ VPLM+P FY GPW+VY+G+ +
Sbjct:    6 SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYKEKFWEEHPGKTVPLMKPVFYRGPWRVYRGEAI 96
The following BLAST results are available for this feature:
BLAST of CX043464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4966_ARATH7.349e-3770.33Uncharacterized protein At4g29660 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11C02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11C02-E3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043464 ID=CX043464; Name=CX043464; organism=Citrus sinensis; type=EST; length=859bp
GCCCCCCCTTTTTTACCTCACAAACAAAAGGGTAAATAGATGAAAAGGAG
TCCCAAAATAAGGGGTCTATAAACATCCCTGACATGGGTGAAGAATATCA
AATTTGCCCCCATTACATTCTCAACAGGTTATTCATTTCACAAAATGAAG
CATTCCCCATACAAAGTCAGAGACATCTCTTTGATCTCACAGAACACCAA
GGTCTCTCCATAGGCTTACATAATCAATTGGGGATGAAGCTTTCTTTTCT
TTATTTTTTCCGCTCTCACTGGCTATGCATCATTTCGACCTGAAAGTTAT
TTTTTACCAAGAATAATATTTGATCACTACGTACCACCAAAACCTGTGAC
CTTTGTACAATAAACACAAGTAGAAAGGAAGTAGCTTCAACACGACTCCA
ATTCACATATTTTGCGGCAGGGTATCCCCCTTGTAAACCTTCCAGGGACC
ACCATAAAATGTTGGCCGCATGAGCGGCACAGCTTCACCAGGGTGATCTT
CCCAATACTTCTCCTTGTAGAGTTGCTCGTTAATAGCAGCGGCAATCACA
CCAGTGTAGAAAGCAGCAACATAGATACTGACAAGGGGTGTGAAAGATTT
GGGTCTTCTGTAGGGCTCTATCATGTCCCAAATTAGTGTTCTTTCCCACT
TTGTGTACACATAGTCCGCGTATTTTCTCCATAAGTAACTCGCCATTTCC
AACCTCCCCCTTTGACTTCCGCTGCCACCCACACTGCCCTTGGACGGCCC
CTCAATAAACCCTATGTCCCGCCACCTAAGCTGCCAAAATTATCCACTGT
CTGCCGTAAATGAAGCTTTTGAAGGTCAGTGGTGACAGCCGTGAAGCGGC
GGCGCAACT
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