DC900221

Overview
NameDC900221
Unique NameDC900221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_USTMA (GPN-loop GTPase 3 homolog UM01243 OS=Ustilago maydis GN=UM01243 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.336e-60
Identity = 117/232 (50.43%), Postives = 161/232 (69.40%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN-----------KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 666
            LDPAAE F+   ++DI+ELISLEDVMEE+ LGPNGGLIYC E+L DNLD W              + DCPGQIEL+TH P++   V+ L S+ +F +CA YLL+SQFI D TK+ +G ++++SAM+ LE+PH+N+LSKMDLV             K+E+E YL+P+   L+ E+N    P+F  LN++L++L+D++SMVSFMPLD   E S+  +LS IDN +Q+GED + K
Sbjct:   39 LDPAAERFEYQPSIDIKELISLEDVMEEMNLGPNGGLIYCFEYLLDNLD-WLDDELGQFNDDYI-IIDCPGQIELYTHFPIMSRLVNILSSQYHFRICATYLLESQFIDDKTKYFAGVLSAMSAMINLEVPHINLLSKMDLVEKGEIGSEAKRGRKREMERYLDPDPLLLMDEVNSRTNPKFHSLNQALVQLIDDFSMVSFMPLDSTDEDSVGTILSHIDNAVQYGEDEEPK 268          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_KLULA (GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis GN=KLLA0D18557g PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.417e-57
Identity = 112/224 (50.00%), Postives = 154/224 (68.75%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 666
            LDPAAE       +DIR+LISLEDVMEE GLGPNG LIYC E+L +NLD W              +FDCPGQIEL+TH+PVL   V HL+++ NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+NILSK+DLV    NKK ++ +LNP+   L  ++N+   P+F KLN+++  LVD++ MV F+PL+ +   S+  +LS ID+  QW E  + K
Sbjct:   39 LDPAAEATKYEFTIDIRDLISLEDVMEEFGLGPNGSLIYCFEYLLNNLD-WLDEEIGDYNDEYL-IFDCPGQIELYTHIPVLPTIVRHLQNQLNFNLCATYLLEAPFVIDTSKFFSGALSAMSAMILLELPHINILSKLDLVKDSHNKKALKKFLNPDPLLLTDKVNEETNPKFHKLNEAIANLVDDFGMVQFLPLEAKNPESVSTILSYIDDVTQWAEAQEPK 260          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_DEBHA (GPN-loop GTPase 3 homolog DEHA2G13222g OS=Debaryomyces hansenii GN=DEHA2G13222g PE=3 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 7.033e-57
Identity = 115/225 (51.11%), Postives = 155/225 (68.89%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCIQWGEDADLK 666
            LDPAAE  +    +DIR+LISL+DVMEE+ LGPNG LIYC E L +NLD W              +FDCPGQIEL+TH+PVL   V HL+ S NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+NILSK+DL+ N   KKE++ +LNP+   L +  +    P+FAKLNK++  LVD++ MV F+PLD  K+S S+  +LS ID+  QW E  + K
Sbjct:   39 LDPAAEPSEYEFTIDIRDLISLQDVMEEMDLGPNGALIYCFEFLMNNLD-WLDEEIGDFNDEYL-IFDCPGQIELYTHIPVLPTIVRHLQTSLNFNLCATYLLEAPFVIDRSKFFSGALSAMSAMILLELPHINILSKIDLIKNEVSKKELKKFLNPDPLLLNASSDNESNPKFAKLNKAIANLVDDFGMVQFLPLDCNKDSDSVATILSYIDDVTQWSESQEPK 261          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_SCHPO (GPN-loop GTPase 3 homolog fet5 OS=Schizosaccharomyces pombe GN=fet5 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.954e-56
Identity = 110/226 (48.67%), Postives = 157/226 (69.47%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN-----KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 666
            LDPAAENF+    +DIR+LIS++DVMEEL  GPNGGLIYC E L +NL DW              +FD PGQIEL+THVP+L   + HL+ + NF  CAVYLL+SQF+ D TKF +G ++++SAMV +E+PH+N+LSKMDL+ +     K E++ +LN +   L  E+N+   P+F +LN+ +++L+D+++MV+F+PL+   E S+  VLS ID+  QW ED + K
Sbjct:   39 LDPAAENFEWEPTVDIRDLISIDDVMEELDYGPNGGLIYCFEFLMENL-DW-LNEEIGDYDEDYLIFDMPGQIELYTHVPILPALIRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDLLKDNNNITKAELKRFLNTDPLLLTGEINETTNPKFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYIDDATQWYEDQEPK 262          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_CANGA (GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata GN=CAGL0G08294g PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.776e-56
Identity = 107/224 (47.77%), Postives = 154/224 (68.75%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 666
            LDPAAE       +DIR+LISL+DVMEEL LGPNG LIYC E+L  NLD W              +FDCPGQIEL+TH+PVL N V HL+ + NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+D++ +   KK+++ +LNP++  L +E +Q++ P+F  LN+ +  LVD++ MV F+PL+     S+  +LS +D+  QW E  + K
Sbjct:   39 LDPAAEPSKYEFTIDIRDLISLDDVMEELDLGPNGALIYCFEYLMKNLD-WLDEEIGDYNDEYL-IFDCPGQIELYTHIPVLPNIVRHLQGQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDMIKDEYGKKKLKRFLNPDAMLLANEADQNLNPKFHHLNQCIANLVDDFGMVQFLPLEANNPESVATILSYVDDVTQWAEAQEQK 260          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_ASHGO (GPN-loop GTPase 3 homolog AGL117C OS=Ashbya gossypii GN=AGL117C PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.262e-55
Identity = 107/224 (47.77%), Postives = 153/224 (68.30%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 666
            LDPAAE  +    +DIR+LISL+DVMEEL LGPNG L+YC E+L +NLD W              +FDCPGQIEL+TH+PVL   V HL+++ NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+DL+    +KK ++ +LNP+   L+   N     +F +LNK++  LVD++ MV F+PL+ +   S+  +LS ID+  QWGE  + K
Sbjct:   39 LDPAAEASEYEFTVDIRDLISLDDVMEELSLGPNGSLVYCFEYLLENLD-WLDEEIGDYNDEYL-IFDCPGQIELYTHIPVLPTIVRHLQNQLNFNLCASYLLEAPFVIDTSKFFSGALSAMSAMILLELPHINVLSKVDLIKDEYSKKRLKRFLNPDPMLLVDSANADTNSKFHQLNKAIANLVDDFGMVQFLPLEAKNPDSVSTILSYIDDITQWGEAQEPK 260          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_YEAST (GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces cerevisiae GN=YLR243W PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.040e-55
Identity = 109/226 (48.23%), Postives = 152/226 (67.26%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV---TNKKEIEDYLNPESQFLLSE--LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 666
            LDPAAE       +DIR+LISL+DVMEE+ LGPNG LIYC E+L  NLD W              +FDCPGQIEL+TH+PVL N V HL  + NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+DL+    NKK+++ +LNP++  L+    +NQ   P+F +LN+ +  LVD++ MV F+PL+     SI  +LS +D+  QW E  + K
Sbjct:   39 LDPAAEATKYEFTIDIRDLISLDDVMEEMDLGPNGALIYCFEYLLKNLD-WLDEEIGDFNDEYL-IFDCPGQIELYTHIPVLPNIVRHLTQQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDLIKGDINKKKLKRFLNPDAMLLMETEGMNQASNPKFLRLNQCIANLVDDFGMVQFLPLESNNPDSIETILSYVDDITQWAEGQEQK 262          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_DICDI (GPN-loop GTPase 3 homolog OS=Dictyostelium discoideum GN=gpn3 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.467e-54
Identity = 104/223 (46.64%), Postives = 159/223 (71.30%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK---KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 666
            LDPAAE F+ PV++DI+ L+++++VM+EL  GPNGGL+Y ME+L +N+D W              + DCPGQIEL++H+PV+R  VDHL+   ++VC+V+L+DSQFI D  KFISG +  LSAMV+LE+PH+N+L+K+D++      KEIE +L+ E Q L+ ELN     ++ ++NK++  L++++S+V F+PLD+  + S+  +L  IDN IQ+GED + K
Sbjct:   39 LDPAAEVFEYPVSVDIKNLVTVDEVMDELHYGPNGGLVYAMEYLIENMD-WLTDELGDYEDDYL-IIDCPGQIELYSHIPVMRILVDHLQQIGYSVCSVFLVDSQFILDNCKFISGALMCLSAMVRLEVPHINVLTKIDVLKTSDQYKEIEKFLDLEVQNLVEELNLETHDRYHRMNKAIGSLLEDFSLVGFVPLDITDQESLNVLLQHIDNSIQYGEDLEPK 259          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_DANRE (GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.467e-54
Identity = 112/225 (49.78%), Postives = 155/225 (68.89%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT--NKKEIEDYLNPESQFLLSELNQHM-APQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 666
            LDPAAE+F+ PV  DIRELI ++DVME+  L  GPNGGLI+CME+  +N D W              +FDCPGQIEL+TH+PV++  V+ L+   F VC V+L+DSQF+ +  KFISG MA+LSAMV LE+P VNI++KMDL++   KKEIE YL+P+   ++ + +  + + +F+KL K++  L+D+YSMV F+P D   E  I  VL  ID  IQ+GED ++K
Sbjct:   39 LDPAAEHFEYPVIADIRELIQVDDVMEDDSLRFGPNGGLIFCMEYFSNNFD-WLEESLGHVEDDYI-LFDCPGQIELYTHLPVMKQLVEQLQQWEFRVCGVFLVDSQFMVETFKFISGVMAALSAMVMLEIPQVNIMTKMDLLSPKAKKEIEKYLDPDMYSMMEDNSVALRSKKFSKLTKAICGLIDDYSMVRFLPFDRTDEEGINIVLQHIDFSIQYGEDLEVK 261          
BLAST of DC900221 vs. ExPASy Swiss-Prot
Match: GPN3_CANAL (GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 OS=Candida albicans GN=CaO19.3130 PE=3 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.467e-54
Identity = 112/225 (49.78%), Postives = 157/225 (69.78%), Query Frame = 1
Query:    7 LDPAAENFDXPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCIQWGEDADLK 666
            LDPAA   +    +D+++LISL+DVMEE+ LGPNGGL+YC E L +NLD W              +FDCPGQIEL+TH+PVL   V HL+ S NFN+CA YLL++ FI D +KF SG ++++SAM+ LELPH+NILSK+DLV    +KK+++ +LNP+   LL++   ++ P+FAKL +S+  LVD++ MV F+PLD  K+S S+  +LS ID+  QW E  + K
Sbjct:   39 LDPAANPTEYEFTIDVKDLISLQDVMEEMELGPNGGLVYCFEFLLNNLD-WLDEEIGDYNDEYL-IFDCPGQIELYTHIPVLPTIVRHLQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEYSKKQLKKFLNPD-PLLLAKQEDYINPKFAKLTQSIANLVDDFGMVQFLPLDCSKDSRSVETILSYIDDVTQWSEAQEPK 260          
The following BLAST results are available for this feature:
BLAST of DC900221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
GPN3_USTMA2.336e-6050.43GPN-loop GTPase 3 homolog UM01243 OS=Ustilago mayd... [more]
GPN3_KLULA2.417e-5750.00GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyvero... [more]
GPN3_DEBHA7.033e-5751.11GPN-loop GTPase 3 homolog DEHA2G13222g OS=Debaryom... [more]
GPN3_SCHPO5.954e-5648.67GPN-loop GTPase 3 homolog fet5 OS=Schizosaccharomy... [more]
GPN3_CANGA7.776e-5647.77GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida ... [more]
GPN3_ASHGO2.262e-5547.77GPN-loop GTPase 3 homolog AGL117C OS=Ashbya gossyp... [more]
GPN3_YEAST5.040e-5548.23GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces... [more]
GPN3_DICDI1.467e-5446.64GPN-loop GTPase 3 homolog OS=Dictyostelium discoid... [more]
GPN3_DANRE1.467e-5449.78GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2[more]
GPN3_CANAL1.467e-5449.78GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900221 VSS Citrus sinensis cDNA clone VS28260 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900221 ID=DC900221; Name=DC900221; organism=Citrus sinensis; type=EST; length=910bp
CTCCTCCTGGATCCTGCTGCAGAAAATTTTGACTNTCCTGTGGCCATGGA
TATTAGGGAACTTATTTCTCTCGAAGACGTTATGGAGGAACTTGGATTGG
GTCCCAATGGTGGTCTAATCTATTGCATGGAACATTTAGAAGATAATCTG
GATGATTGGCTGGCAGAGGAGTTGGATAACTACTTGGATGATGACTATCT
TGTTTTTGATTGCCCAGGCCAGATTGAACTTTTTACGCATGTGCCAGTTC
TTCGGAACTTTGTGGACCATTTGAAGAGTAGAAATTTTAATGTCTGCGCT
GTGTACTTGCTCGATTCACAGTTCATCACAGATGTCACCAAGTTTATAAG
TGGGTGCATGGCATCTCTTTCTGCAATGGTCCAGCTCGAATTACCCCATG
TTAATATCCTCTCTAAAATGGACCTTGTGACAAACAAAAAGGAAATTGAA
GACTACTTGAATCCAGAATCACAATTTCTATTGTCAGAGTTGAATCAACA
CATGGCTCCTCAGTTTGCAAAGCTAAATAAGTCTCTGATTGAGCTGGTGG
ACGAGTATAGCATGGTCAGTTTTATGCCTCTTGACTTGAGGAAGGAGAGC
AGTATAAGGTATGTGTTGTCTCAAATTGACAACTGCATCCAGTGGGGAGA
AGACGCGGATTTGAAAATTAAGGATTTTGATCCAGAAGATGACGATGAAT
AGCCTCATTCGCGGCTCTAAAAAGTTCTAAGTGTTTAAACGTCTATGCTC
CCTTTGGATTAAACAATGACTCGNGTAGATATCTTATAGAAAAATGATGG
GNAATTTTTATCAACACTTGGATGAACTTTTGACTACTAAAATCTTCACT
CATACATTTGGGGAACTTTAGACTGAAATTTGATTTTAAAGCATGAAGCT
GGAATTAATT
back to top