CX043341

Overview
NameCX043341
Unique NameCX043341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3565 contig Csv1_Contig3565:1..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 4.204e-42
Identity = 96/217 (44.24%), Postives = 129/217 (59.45%), Query Frame = 3
Query:  177 QSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            Q+ S       I K+ + K ++S   +++L  R+ LPA++ +   L  + ++QV+V+SG TGCGKTTQ+PQFIL++ L+       NIICTQP              ER E +G TVGYQIRLES +S+ TRLL+CTTGVLLR+L  D  L  VSH++VDE+HER    DF                   MSAT+NA+LFS YF + P + IPG TF
Sbjct:  510 QAKSVHAENGKICKQFRMK-QASRQFQSILQERQSLPAWEERETILNLLRKHQVVVISGMTGCGKTTQIPQFILDDSLNGPPEKVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDTALQGVSHIIVDEVHERTEESDFLLLVLKDIVSQRPGLQVILMSATLNAELFSDYFNSCPVITIPGRTF 725          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.725e-41
Identity = 94/203 (46.31%), Postives = 123/203 (60.59%), Query Frame = 3
Query:  222 RQEKLK-SSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            RQ ++K +S    A+L  R+ LPA++ +   LK ++++QV+V+SG TGCGKTTQ+PQFIL+  L+       NIICTQP              ER E +G TVGYQIRLES +S+ TRLL+CTTGVLLR+L  D  L  V+H++VDE+HER    DF                   MSAT++A LFSKYF   P + IPG  F
Sbjct:  524 RQFQMKQASRQFHAILQERQLLPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNGPPERVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRATLQVILMSATLDAGLFSKYFSYCPVITIPGRAF 726          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.649e-41
Identity = 92/220 (41.82%), Postives = 126/220 (57.27%), Query Frame = 3
Query:  177 QSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENL--GETVGYQIRLESK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            Q +     L+  L E  +K K+      M  FREKLP++ M+ E +  +  +QV V+SGETGCGKTTQ+ QFIL+  +   +G+ C I+CTQP              ER E+   G + GYQIRL+S+    Q  +L+CTTG++L+ L  DP LS VSH+++DEIHER +  D                    MSAT+NA+ FS+YFGN P +HIPG TF
Sbjct:  172 QENEPDGTLDQKLLEDLQKKKNDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGSGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDPYLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTF 391          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.036e-40
Identity = 99/281 (35.23%), Postives = 145/281 (51.60%), Query Frame = 3
Query:    9 STEKELQMSKETERRVGNLLNSSQGNVPVNDSGIESSEAA-----RQPKLSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENL--GETVGYQIRLESK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            S+EK++   K+ + +   LLN  +    + D      ++       +P LS                  L+  L E  ++ K+      M  FR+KLP++ M+ E +  +  +QV V+SGETGCGKTTQ+ QFIL+  +   +G+ C I+CTQP              ER E+   G + GYQIRL+S+    Q  +L+CTTG++L+ L  D  LS VSH+++DEIHER +  D                    MSAT+NA+ FS+YFGN P +HIPG TF
Sbjct:  122 SSEKKINSEKKLDNQEKKLLNQEKKTFRITDKSYIDRDSEYLLQENEPNLS------------------LDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGNGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTF 384          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.013e-40
Identity = 93/216 (43.06%), Postives = 122/216 (56.48%), Query Frame = 3
Query:  213 LKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENL---------GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVE--DPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            L+ +Q +L +S S   M   R  LPA     E L  +  N+V++++GETGCGKTTQ+PQFIL+E + + RG++CNI+ TQP              ERGE L         G  VGY IR E + S + RLLF TTGVLLR+L    D DL  +SH++VDE+HER ++ DF                   MSATIN + F+ YFG AP + IPG TF
Sbjct:  713 LQRQQRQLHTSPSYSKMDETRRSLPAASAAREILGLIRSNRVVIIAGETGCGKTTQVPQFILDEAIEAGRGSECNIVVTQPRRVSAIGVASRVAVERGEKLDGKKKAVAPGSLVGYAIRGERRASRECRLLFTTTGVLLRRLGAGGDTDLKGISHVVVDEVHERNVDSDFLLLELRELLRRNSRIKVVLMSATINQETFASYFGKAPCISIPGRTF 928          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.547e-36
Identity = 88/227 (38.77%), Postives = 122/227 (53.74%), Query Frame = 3
Query:  195 ERLNVILKERQEKLKSSDSGKA---------------MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVE-DPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            ER NV   E + +  S  SG+                  SFR+ LP F+ + E +K + EN+V+++ GETG GKTTQ+PQF+L++   +  G  C I CTQP              ER E +G+T+GYQIRLES+ S +T L FCT GVLLR L+  D  LS V+H++VDE+HER    DF                    SA ++ +LF +YFG+ P ++I G  F
Sbjct:  164 ERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKN--GIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPF 388          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.547e-36
Identity = 88/227 (38.77%), Postives = 122/227 (53.74%), Query Frame = 3
Query:  195 ERLNVILKERQEKLKSSDSGKA---------------MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVE-DPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            ER NV   E + +  S  SG+                  SFR+ LP F+ + E +K + EN+V+++ GETG GKTTQ+PQF+L++   +  G  C I CTQP              ER E +G+T+GYQIRLES+ S +T L FCT GVLLR L+  D  LS V+H++VDE+HER    DF                    SA ++ +LF +YFG+ P ++I G  F
Sbjct:  149 ERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKN--GIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPF 373          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.447e-36
Identity = 84/226 (37.17%), Postives = 129/226 (57.08%), Query Frame = 3
Query:  156 ANTISPPQSDSAKERLNVILK-ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLES-KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            +N    P + +  E++++ LK E   +L+     +A+L  RE LP  K ++E L+A+++N V+++ G TGCGKTTQ+PQFIL++ + + R A+CNI+ TQP              ERGE  G++ GY +R ES        ++FCT GVLLR+L  +  +  +SH++VDEIHER +N DF                   MSATI+  +F +YF N P + + G T+
Sbjct:  345 SNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTY 568          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 3.447e-36
Identity = 84/226 (37.17%), Postives = 129/226 (57.08%), Query Frame = 3
Query:  156 ANTISPPQSDSAKERLNVILK-ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLES-KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            +N    P + +  E++++ LK E   +L+     +A+L  RE LP  K ++E L+A+++N V+++ G TGCGKTTQ+PQFIL++ + + R A+CNI+ TQP              ERGE  G++ GY +R ES        ++FCT GVLLR+L  +  +  +SH++VDEIHER +N DF                   MSATI+  +F +YF N P + + G T+
Sbjct:  345 SNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTY 568          
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.447e-36
Identity = 85/226 (37.61%), Postives = 129/226 (57.08%), Query Frame = 3
Query:  156 ANTISPPQSDSAKERLNVILK-ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLES-KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827
            +N    P + +  E++++ LK E   +L+     +A+L  RE LP  K ++E L+A+++N V+++ G TGCGKTTQ+PQFIL++ + + R A+CNI+ TQP              ERGE  G++ GY +R ES        ++FCT GVLLR+L  +  +  +SH++VDEIHER +N DF                   MSATI+  +F +YF N P + + G TF
Sbjct:  342 SNIDEGPLAYATPEQISMDLKNELMYQLEQDRDLQAVLQERELLPVKKFESEILEAISQNPVVIIRGATGCGKTTQVPQFILDDCIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTF 565          
The following BLAST results are available for this feature:
BLAST of CX043341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
DHX57_HUMAN4.204e-4244.24Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX57_MOUSE2.725e-4146.31Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
DHX36_HUMAN4.649e-4141.82Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]
DHX36_MOUSE1.036e-4035.23Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
YUM14_USTMA3.013e-4043.06Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
YTDC2_MOUSE1.547e-3638.77Probable ATP-dependent RNA helicase YTHDC2 OS=Mus ... [more]
YTDC2_HUMAN1.547e-3638.77Probable ATP-dependent RNA helicase YTHDC2 OS=Homo... [more]
DHX9_PONAB3.447e-3637.17ATP-dependent RNA helicase A OS=Pongo abelii GN=DH... [more]
DHX9_HUMAN3.447e-3637.17ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
DHX9_BOVIN3.447e-3637.61ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10D12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10D12-H24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043341 ID=CX043341; Name=CX043341; organism=Citrus sinensis; type=EST; length=827bp
GTCATGGATCAACGGAGAAAGAGCTTCAAATGTCCAAAGAAACTGAGAGG
AGAGTTGGAAACCTTCTGAATAGCTCGCAGGGGAATGTACCTGTTAATGA
TTCTGGCATAGAGTCTAGTGAAGCAGCGAGACAACCAAAGCTTAGTGTAA
AAGTAGCTAATACTATCTCCCCACCACAGTCCGATTCTGCAAAAGAGAGA
CTTAATGTCATACTTAAGGAGAGGCAGGAGAAATTGAAGTCGAGTGATAG
TGGGAAGGCTATGCTATCTTTCAGAGAAAAGCTTCCTGCATTCAAAATGA
AAGCTGAGTTTCTTAAAGCTGTTGCAGAGAATCAGGTATTGGTAGTTTCA
GGAGAGACAGGGTGTGGAAAAACAACACAGCTTCCTCAATTTATTTTGGA
AGAGGAGTTATCTAGTTTGCGTGGTGCTGACTGCAACATAATATGCACAC
AACCCCGTCGTATATCTGCCATATCTGTAGCAGCTCGAGTATCCTCAGAA
AGAGGAGAGAATCTCGGCGAAACTGTTGGTTATCAGATTCGTCTGGAGTC
AAAGCGCTCTGCTCAAACACGGCTCCTCTTTTGCACCACTGGAGTATTAC
TTCGGCAGTTGGTTGAGGACCCAGATTTAAGTTGTGTGAGCCATTTGCTG
GTTGATGAAATTCACGAAAGAGGGATGAATGAGGACTTTTTGTTAATAAT
TCTGCGTGACCTACTTCCTCGACGTCCCGATCTGCGTCTTATCCTAATGA
GTGCTACAATTAATGCTGATCTGTTTTCCAAATACTTTGGGAATGCCCCA
ACAGTACATATACCGGGATTGACTTTT
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