CX043341
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2) HSP 1 Score: 171.785 bits (434), Expect = 4.204e-42 Identity = 96/217 (44.24%), Postives = 129/217 (59.45%), Query Frame = 3 Query: 177 QSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 Q+ S I K+ + K ++S +++L R+ LPA++ + L + ++QV+V+SG TGCGKTTQ+PQFIL++ L+ NIICTQP ER E +G TVGYQIRLES +S+ TRLL+CTTGVLLR+L D L VSH++VDE+HER DF MSAT+NA+LFS YF + P + IPG TF Sbjct: 510 QAKSVHAENGKICKQFRMK-QASRQFQSILQERQSLPAWEERETILNLLRKHQVVVISGMTGCGKTTQIPQFILDDSLNGPPEKVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDTALQGVSHIIVDEVHERTEESDFLLLVLKDIVSQRPGLQVILMSATLNAELFSDYFNSCPVITIPGRTF 725
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 2.725e-41 Identity = 94/203 (46.31%), Postives = 123/203 (60.59%), Query Frame = 3 Query: 222 RQEKLK-SSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 RQ ++K +S A+L R+ LPA++ + LK ++++QV+V+SG TGCGKTTQ+PQFIL+ L+ NIICTQP ER E +G TVGYQIRLES +S+ TRLL+CTTGVLLR+L D L V+H++VDE+HER DF MSAT++A LFSKYF P + IPG F Sbjct: 524 RQFQMKQASRQFHAILQERQLLPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNGPPERVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRATLQVILMSATLDAGLFSKYFSYCPVITIPGRAF 726
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.649e-41 Identity = 92/220 (41.82%), Postives = 126/220 (57.27%), Query Frame = 3 Query: 177 QSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENL--GETVGYQIRLESK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 Q + L+ L E +K K+ M FREKLP++ M+ E + + +QV V+SGETGCGKTTQ+ QFIL+ + +G+ C I+CTQP ER E+ G + GYQIRL+S+ Q +L+CTTG++L+ L DP LS VSH+++DEIHER + D MSAT+NA+ FS+YFGN P +HIPG TF Sbjct: 172 QENEPDGTLDQKLLEDLQKKKNDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGSGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDPYLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTF 391
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.036e-40 Identity = 99/281 (35.23%), Postives = 145/281 (51.60%), Query Frame = 3 Query: 9 STEKELQMSKETERRVGNLLNSSQGNVPVNDSGIESSEAA-----RQPKLSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENL--GETVGYQIRLESK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 S+EK++ K+ + + LLN + + D ++ +P LS L+ L E ++ K+ M FR+KLP++ M+ E + + +QV V+SGETGCGKTTQ+ QFIL+ + +G+ C I+CTQP ER E+ G + GYQIRL+S+ Q +L+CTTG++L+ L D LS VSH+++DEIHER + D MSAT+NA+ FS+YFGN P +HIPG TF Sbjct: 122 SSEKKINSEKKLDNQEKKLLNQEKKTFRITDKSYIDRDSEYLLQENEPNLS------------------LDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGNGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTF 384
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 3.013e-40 Identity = 93/216 (43.06%), Postives = 122/216 (56.48%), Query Frame = 3 Query: 213 LKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENL---------GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVE--DPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 L+ +Q +L +S S M R LPA E L + N+V++++GETGCGKTTQ+PQFIL+E + + RG++CNI+ TQP ERGE L G VGY IR E + S + RLLF TTGVLLR+L D DL +SH++VDE+HER ++ DF MSATIN + F+ YFG AP + IPG TF Sbjct: 713 LQRQQRQLHTSPSYSKMDETRRSLPAASAAREILGLIRSNRVVIIAGETGCGKTTQVPQFILDEAIEAGRGSECNIVVTQPRRVSAIGVASRVAVERGEKLDGKKKAVAPGSLVGYAIRGERRASRECRLLFTTTGVLLRRLGAGGDTDLKGISHVVVDEVHERNVDSDFLLLELRELLRRNSRIKVVLMSATINQETFASYFGKAPCISIPGRTF 928
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.547e-36 Identity = 88/227 (38.77%), Postives = 122/227 (53.74%), Query Frame = 3 Query: 195 ERLNVILKERQEKLKSSDSGKA---------------MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVE-DPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 ER NV E + + S SG+ SFR+ LP F+ + E +K + EN+V+++ GETG GKTTQ+PQF+L++ + G C I CTQP ER E +G+T+GYQIRLES+ S +T L FCT GVLLR L+ D LS V+H++VDE+HER DF SA ++ +LF +YFG+ P ++I G F Sbjct: 164 ERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKN--GIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPF 388
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 1.547e-36 Identity = 88/227 (38.77%), Postives = 122/227 (53.74%), Query Frame = 3 Query: 195 ERLNVILKERQEKLKSSDSGKA---------------MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVE-DPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 ER NV E + + S SG+ SFR+ LP F+ + E +K + EN+V+++ GETG GKTTQ+PQF+L++ + G C I CTQP ER E +G+T+GYQIRLES+ S +T L FCT GVLLR L+ D LS V+H++VDE+HER DF SA ++ +LF +YFG+ P ++I G F Sbjct: 149 ERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKN--GIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPF 373
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.447e-36 Identity = 84/226 (37.17%), Postives = 129/226 (57.08%), Query Frame = 3 Query: 156 ANTISPPQSDSAKERLNVILK-ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLES-KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 +N P + + E++++ LK E +L+ +A+L RE LP K ++E L+A+++N V+++ G TGCGKTTQ+PQFIL++ + + R A+CNI+ TQP ERGE G++ GY +R ES ++FCT GVLLR+L + + +SH++VDEIHER +N DF MSATI+ +F +YF N P + + G T+ Sbjct: 345 SNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTY 568
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4) HSP 1 Score: 152.14 bits (383), Expect = 3.447e-36 Identity = 84/226 (37.17%), Postives = 129/226 (57.08%), Query Frame = 3 Query: 156 ANTISPPQSDSAKERLNVILK-ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLES-KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 +N P + + E++++ LK E +L+ +A+L RE LP K ++E L+A+++N V+++ G TGCGKTTQ+PQFIL++ + + R A+CNI+ TQP ERGE G++ GY +R ES ++FCT GVLLR+L + + +SH++VDEIHER +N DF MSATI+ +F +YF N P + + G T+ Sbjct: 345 SNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTY 568
BLAST of CX043341 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.447e-36 Identity = 85/226 (37.61%), Postives = 129/226 (57.08%), Query Frame = 3 Query: 156 ANTISPPQSDSAKERLNVILK-ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPXXXXXXXXXXXXXXERGENLGETVGYQIRLES-KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFXXXXXXXXXXXXXXXXXXXMSATINADLFSKYFGNAPTVHIPGLTF 827 +N P + + E++++ LK E +L+ +A+L RE LP K ++E L+A+++N V+++ G TGCGKTTQ+PQFIL++ + + R A+CNI+ TQP ERGE G++ GY +R ES ++FCT GVLLR+L + + +SH++VDEIHER +N DF MSATI+ +F +YF N P + + G TF Sbjct: 342 SNIDEGPLAYATPEQISMDLKNELMYQLEQDRDLQAVLQERELLPVKKFESEILEAISQNPVVIIRGATGCGKTTQVPQFILDDCIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTF 565 The following BLAST results are available for this feature:
BLAST of CX043341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043341 ID=CX043341; Name=CX043341; organism=Citrus sinensis; type=EST; length=827bpback to top |