CX043340

Overview
NameCX043340
Unique NameCX043340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = -3
Query:  373 NRYSHDLEMVCAILCAGLYPNVVQCKR-----------------KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEG---IEMLGGYLHF-SASKTVLELIRKLRGELDKLLNRKIEDPRVDLSV--EGKAVVSAVVELL 843
            N  + + +++ A+LCA LYPNVVQ K                  K     F TK  G V +HPSSVN    +F  PY++Y E +KT+ + + D + +S Y L+LFGG  +  +   G   + +  G++ F +AS  V EL+++LR ELD+LL  KI++P +DL     G  ++S +V+L+
Sbjct: 1204 NSNAENPKLISAMLCAALYPNVVQVKSPEGKFQKTSTGAVRMQPKSAELKFVTKNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGEFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNPSIDLCTCPRGSRIISTIVKLV 1383          
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = -3
Query:  373 NRYSHDLEMVCAILCAGLYPNVVQCKR-----------------KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEG---IEMLGGYLHF-SASKTVLELIRKLRGELDKLLNRKIEDPRVDL--SVEGKAVVSAVVELL 843
            N  + + +++ A+LCA LYPNVVQ K                  K     F TK  G V +HPSSVN    +F  PY++Y E +KT+ + + D + +S Y L+LFGG  +  +   G   + +  G++ F +AS  V EL+++LR ELD+LL  KI++P +DL     G  ++S +V+L+
Sbjct: 1206 NTNAENPKLISAVLCAALYPNVVQVKTPEGKFQKTSSGVVRLQPKSAELKFVTKNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGAFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNPSMDLCSCPRGSRIISMIVKLI 1385          
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21
Identity = 60/172 (34.88%), Postives = 98/172 (56.98%), Query Frame = -3
Query:  373 KGPSAYNRYSHDLEMVCAILCAGLYPNVVQCK----RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNL-IPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRV----DLSVEGKAVVSAVVELL 861
            K P A N  S + +++ A++CAGLYP V + +    +K K    +TK  G V++HP SVN  Q +F   +++Y   ++T++I +YD T +S Y LL FGG++ I     + I  +  ++ F + + +  L++ LR ELD LL  KIE P      D      AV+SA+++L+
Sbjct:  810 KDPKA-NINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVHTKSDGLVSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDKDQEIIAVDEWIVFQSPERIAHLVKGLRKELDSLLQEKIESPHPVDWDDTKSRDCAVLSAILDLI 980          
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = -3
Query:  373 NRYSHDLEMVCAILCAGLYPNVVQCK----RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNL-IPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRV----DLSVEGKAVVSAVVELL 843
            N  S + +++ A++CAGLYP V + +    +K K    YTK  G VA+HP SVN  Q +F   +++Y   ++T++I +YD T +S Y LL FGG++ I     +    +  ++ F +   +  L+++LR ELD LL  KIE P      D      AV+SA+++L+
Sbjct:  822 NINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVYTKTDGLVAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHPVDWNDTKSRDCAVLSAIIDLI 987          
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 47/169 (27.81%), Postives = 93/169 (55.03%), Query Frame = -3
Query:  373 KGPSAYNRYSHDLEMVCAILCAGLYPNV--VQCKRK----GKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRVDLSVEGKAVVSAVVELL 861
            KGP   +    D+ ++ A+L AGLY +V  + C +      K A       G+  +HPSSVN +   +   +++Y E V+   + + ++T I+ + +LLFGG+ I  +  E +  + G+++F A   +  + ++LR  +D +L +K+E+P+  +S+E   ++  + EL+
Sbjct: 1199 KGPQTLS--FQDIALLKAVLAAGLYDSVGKIMCTKSVDVTEKLACMVETAQGKAQVHPSSVNRDLQTYG--WLLYQEKVRYTRVYLRETTLITPFPVLLFGGD-IEVQHRERLLSVDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPK--MSLENDKILQIITELI 1360          
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 46/166 (27.71%), Postives = 90/166 (54.22%), Query Frame = -3
Query:  373 DLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEV--------------GQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRVDLSVEGKAVVSAVVELL 828
            ++ ++ A+L AGLY NV      GK  + YTK V              G+  +HPSSVN +       +++Y E ++   + + ++T I+ + +LLFGG+ I  +  E +  + G+++F A   +  + ++LR  +D +L +K+E+P+  +S+E   ++  + EL+
Sbjct: 1212 EIALLKAVLVAGLYDNV------GK--IIYTKSVDVTEKLACIVETAQGKAQVHPSSVNRDLQTHG--WLLYQEKIRYARVYLRETTLITPFPVLLFGGD-IEVQHRERLLSIDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPK--MSLENDKILQIITELI 1364          
The following BLAST results are available for this feature:
BLAST of CX043340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DHX57_HUMAN8.074e-2335.56Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX57_MOUSE1.377e-2235.56Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
DHX36_MOUSE7.557e-2134.88Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
DHX36_HUMAN9.870e-2134.94Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]
DHX29_MOUSE2.204e-1227.81ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
DHX29_HUMAN5.429e-1127.71ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10D12-H24-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043340 ID=CX043340; Name=CX043340; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTAACCATAATAATAGCATGCATGCTATTGTTATT
TATTATTTCTGCTATGAATTAACAACTACCAGAATGTATCAGAAATGTTC
GGCTTAAAAAATATTTTCCAAAGTGTTTCTTTAAATCATTGCTAACAGTC
TAACACTGAGATCTCTTAAAGCGTTATCTTTCAACTTTGTGTACCGAAAT
AATAAAACATCTAATAATACATCCATTAAACTAAATTGATAAAAAGAGAT
CATAGGAAAATCTTGGCGATTTCAGATTGCTATTCCGGAGGAAGAAAGAA
TGGTAGGCCTCCTATTTTCACTAGCATTGTTTCAGGAAGGATCATAAATT
TTTACTGTTCATCTTAACCATGCAACAATTCAACAACAGCCGAAACCACT
GCCTTTCCCTCCACAGAAAGGTCAACCCTTGGGTCCTCAATCTTCCTATT
CAAAAGTTTGTCGAGCTCCCCCCGTAATTTCCGAATCAACTCTAGTACAG
TCTTAGATGCAGAGAAATGAAGGTAACCACCAAGCATTTCAATGCCCTCC
CCAGTTTTGCTAGGAATGAGATTACCACCAAATAGAAGCAAAGCGTATTC
TGATATATTGGTTGAGTCATAGACATTGATGTTGTTTGTCTTCACCATTT
CACTATAAACCATATAAGGCAGTGGAAAGTTATTTTGGTTTGCATTAACA
GAAGATGGATGGAGTGCCACCTGCCCAACTTCTTTTGTGTAGAATACAGC
TCGCTTTCCTTTTCTTTTGCACTGCACAACATTTGGGTAGAGCCCAGCAC
AAAGAATTGCACATACCATCTCCAAATCATGGCTGTATCGGTTGTAAGCA
CTAGGACCCTTGGATTTGTCTA
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