CX043340
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23 Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = -3 Query: 373 NRYSHDLEMVCAILCAGLYPNVVQCKR-----------------KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEG---IEMLGGYLHF-SASKTVLELIRKLRGELDKLLNRKIEDPRVDLSV--EGKAVVSAVVELL 843 N + + +++ A+LCA LYPNVVQ K K F TK G V +HPSSVN +F PY++Y E +KT+ + + D + +S Y L+LFGG + + G + + G++ F +AS V EL+++LR ELD+LL KI++P +DL G ++S +V+L+ Sbjct: 1204 NSNAENPKLISAMLCAALYPNVVQVKSPEGKFQKTSTGAVRMQPKSAELKFVTKNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGEFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNPSIDLCTCPRGSRIISTIVKLV 1383
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = -3 Query: 373 NRYSHDLEMVCAILCAGLYPNVVQCKR-----------------KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEG---IEMLGGYLHF-SASKTVLELIRKLRGELDKLLNRKIEDPRVDL--SVEGKAVVSAVVELL 843 N + + +++ A+LCA LYPNVVQ K K F TK G V +HPSSVN +F PY++Y E +KT+ + + D + +S Y L+LFGG + + G + + G++ F +AS V EL+++LR ELD+LL KI++P +DL G ++S +V+L+ Sbjct: 1206 NTNAENPKLISAVLCAALYPNVVQVKTPEGKFQKTSSGVVRLQPKSAELKFVTKNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGAFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNPSMDLCSCPRGSRIISMIVKLI 1385
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21 Identity = 60/172 (34.88%), Postives = 98/172 (56.98%), Query Frame = -3 Query: 373 KGPSAYNRYSHDLEMVCAILCAGLYPNVVQCK----RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNL-IPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRV----DLSVEGKAVVSAVVELL 861 K P A N S + +++ A++CAGLYP V + + +K K +TK G V++HP SVN Q +F +++Y ++T++I +YD T +S Y LL FGG++ I + I + ++ F + + + L++ LR ELD LL KIE P D AV+SA+++L+ Sbjct: 810 KDPKA-NINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVHTKSDGLVSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDKDQEIIAVDEWIVFQSPERIAHLVKGLRKELDSLLQEKIESPHPVDWDDTKSRDCAVLSAILDLI 980
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21 Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = -3 Query: 373 NRYSHDLEMVCAILCAGLYPNVVQCK----RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNL-IPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRV----DLSVEGKAVVSAVVELL 843 N S + +++ A++CAGLYP V + + +K K YTK G VA+HP SVN Q +F +++Y ++T++I +YD T +S Y LL FGG++ I + + ++ F + + L+++LR ELD LL KIE P D AV+SA+++L+ Sbjct: 822 NINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVYTKTDGLVAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHPVDWNDTKSRDCAVLSAIIDLI 987
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12 Identity = 47/169 (27.81%), Postives = 93/169 (55.03%), Query Frame = -3 Query: 373 KGPSAYNRYSHDLEMVCAILCAGLYPNV--VQCKRK----GKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRVDLSVEGKAVVSAVVELL 861 KGP + D+ ++ A+L AGLY +V + C + K A G+ +HPSSVN + + +++Y E V+ + + ++T I+ + +LLFGG+ I + E + + G+++F A + + ++LR +D +L +K+E+P+ +S+E ++ + EL+ Sbjct: 1199 KGPQTLS--FQDIALLKAVLAAGLYDSVGKIMCTKSVDVTEKLACMVETAQGKAQVHPSSVNRDLQTYG--WLLYQEKVRYTRVYLRETTLITPFPVLLFGGD-IEVQHRERLLSVDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPK--MSLENDKILQIITELI 1360
BLAST of CX043340 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 46/166 (27.71%), Postives = 90/166 (54.22%), Query Frame = -3 Query: 373 DLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEV--------------GQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKTVLELIRKLRGELDKLLNRKIEDPRVDLSVEGKAVVSAVVELL 828 ++ ++ A+L AGLY NV GK + YTK V G+ +HPSSVN + +++Y E ++ + + ++T I+ + +LLFGG+ I + E + + G+++F A + + ++LR +D +L +K+E+P+ +S+E ++ + EL+ Sbjct: 1212 EIALLKAVLVAGLYDNV------GK--IIYTKSVDVTEKLACIVETAQGKAQVHPSSVNRDLQTHG--WLLYQEKIRYARVYLRETTLITPFPVLLFGGD-IEVQHRERLLSIDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPK--MSLENDKILQIITELI 1364 The following BLAST results are available for this feature:
BLAST of CX043340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043340 ID=CX043340; Name=CX043340; organism=Citrus sinensis; type=EST; length=872bpback to top |