CX043323

Overview
NameCX043323
Unique NameCX043323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6148 contig Csv1_Contig6148:328..1181. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043323 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.039e-67
Identity = 128/231 (55.41%), Postives = 154/231 (66.67%), Query Frame = 3
Query:    3 QLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 692
            QLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +FDGD EDFR +LKDPS API+LD VE+I A+
Sbjct:   98 QLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CX043323 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.149e-66
Identity = 127/231 (54.98%), Postives = 153/231 (66.23%), Query Frame = 3
Query:    3 QLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 692
            QLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +F GD EDFR +LKDPS API+LD VE+I A+
Sbjct:   98 QLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CX043323 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.367e-43
Identity = 100/225 (44.44%), Postives = 137/225 (60.89%), Query Frame = 3
Query:    3 QLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELD 668
            QL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+LDD+  G   + ++  +C NG++ +  MR  V GI  AFLK    G+  + R ++KDPS++P +LD
Sbjct:   90 QLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKLD 311          
BLAST of CX043323 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.978e-34
Identity = 95/237 (40.08%), Postives = 128/237 (54.01%), Query Frame = 3
Query:    3 QLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKD--PSLAPIELDEVEFI 683
            QLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D+LDD+ +G +  + S  LC NG++ R PMRR V G+  +FLKAY +GD  +    +KD      P+E+ E E I
Sbjct:   90 QLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFREC-QGPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGLVVSFLKAYLEGDDREL-VKIKDGCHEDVPVEIQEFEVI 317          
BLAST of CX043323 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.766e-28
Identity = 84/229 (36.68%), Postives = 121/229 (52.84%), Query Frame = 3
Query:    3 QLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIEL 665
            +L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG++ N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP                 CAP + +H+QF+  C   + +HF    YGHMD+L++    P    +S  +C    +P+  MRR + GI  AFL AYF  D   +  ++ + SLAP  L
Sbjct:  108 KLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGFS-NIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNHTIS---CAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNAYFRDDGRQYYAIIANRSLAPTNL 329          
The following BLAST results are available for this feature:
BLAST of CX043323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN1.039e-6755.41Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI1.149e-6654.98Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH1.367e-4344.44Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH1.978e-3440.08Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL2.766e-2836.68Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10C11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C11-F22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043323 ID=CX043323; Name=CX043323; organism=Citrus sinensis; type=EST; length=854bp
CTCAGTTATACGATTTTCTGCCGCCGAAAGGAAACGGAGAAGTTAACGAT
GCAGCAAACGTCCTCAACTGGTTATCAACAGGCCTTCAATCAGAACTCCC
GGAAAATGTTGAAGCTAACCTAAACTACGTTGCTCTTATGGGACACAGTC
GCGGAGGACTAATAGCGTTCGGTCTGGCACTTGGCTATGCAACAAATCCT
CCAGTTAGCATTAAAATTTCAGCATTAGTAGGCATAGACCCAGTTGCGGG
GTTAGCCAGCGTTCATAGTGAACTTGAACCCCCGATTCTCAGTCATGACT
CATTCGAGTTCTCAATTCCTGTTACTGTAATTGGCACCGGACTCGGTGGT
GTGACAAAGTGCATGCAGCCTTGTGCACCGGAAAACAAAAACCATGAGCA
ATTTTTCAAGAGGTGTACATATTCAGATCATGCTCATTTTGATGCTAAGG
ATTATGGTCACATGGACATTTTAGATGATAATCCCCAGGGACCAAAGAAT
TGGGCAATTTCAAAATTTTTGTGCACGAATGGAAAGAAACCAAGGGATCC
CATGAGGAGATGTGTTGCTGGCATTGCTGCGGCTTTTTTGAAGGCCTATT
TTGATGGTGATTGTGAGGATTTCAGGACAATGTTGAAAGACCCTTCTCTT
GCTCCGATAGAGCTTGATGAGGTTGAGTTCATTCCCGCAGCTCGTGCAAA
AGCTTAACCACTGCACCTACCCATTTGACTCATATGCACTTTCCATTTTG
GGAGGTAAACTTCTCAGAAATGAGGGAAAGCTTAGAAAAACTAAATAATA
TATAATAACGGGACATAATGAGCTTTGCTTAGGATGACCTTTTAAGTAAT
GATC
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