CX043322

Overview
NameCX043322
Unique NameCX043322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6148 contig Csv1_Contig6148:353..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043322 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.030e-65
Identity = 123/218 (56.42%), Postives = 148/218 (67.89%), Query Frame = -2
Query:  218 EVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 871
            E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +FDGD EDFR +LKDPS API+LD VE+I A+
Sbjct:  111 ELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CX043322 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.139e-64
Identity = 122/218 (55.96%), Postives = 147/218 (67.43%), Query Frame = -2
Query:  218 EVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 871
            E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +F GD EDFR +LKDPS API+LD VE+I A+
Sbjct:  111 ELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CX043322 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.150e-41
Identity = 95/216 (43.98%), Postives = 132/216 (61.11%), Query Frame = -2
Query:  242 GNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELD 880
            G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+LDD+  G   + ++  +C NG++ +  MR  V GI  AFLK    G+  + R ++KDPS++P +LD
Sbjct:   99 GQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKLD 311          
BLAST of CX043322 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.805e-33
Identity = 91/225 (40.44%), Postives = 124/225 (55.11%), Query Frame = -2
Query:  227 EVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKD--PSLAPIELDEVEFI 871
            E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D+LDD+ +G +  + S  LC NG++ R PMRR V G+  +FLKAY +GD  +    +KD      P+E+ E E I
Sbjct:  102 EIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFREC-QGPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGLVVSFLKAYLEGDDREL-VKIKDGCHEDVPVEIQEFEVI 317          
BLAST of CX043322 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.481e-27
Identity = 81/214 (37.85%), Postives = 116/214 (54.21%), Query Frame = -2
Query:  245 EVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIEL 871
            E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG++ N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP           T     CAP + +H+QF+  C   + +HF    YGHMD+L++    P    +S  +C    +P+  MRR + GI  AFL AYF  D   +  ++ + SLAP  L
Sbjct:  123 EIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGFS-NIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNHTIS---CAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNAYFRDDGRQYYAIIANRSLAPTNL 329          
The following BLAST results are available for this feature:
BLAST of CX043322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN1.030e-6556.42Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI1.139e-6455.96Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH5.150e-4143.98Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH8.805e-3340.44Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL2.481e-2737.85Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10C11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C11-F22-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043322 ID=CX043322; Name=CX043322; organism=Citrus sinensis; type=EST; length=884bp
TTTGAATGTAGAAGAAACTGCTGACAAAGAAACCAAATACAGTAATAAAC
AACATGATCATTACTTAAAAGGTCATCCTAAGCAAGGCTCATTATGTCCC
GTTATTATATATTATTTAGTTTTTCTAAGCTTTCCCTCATTTCTGAGAAG
TTTACCTCCCAAAATGGAAAGTGCATATGAGTCAAATGGGTAGGTGCAGT
GGTTAAGCTTTTGCACGAGCTGCGGGAATGAACTCAACCTCATCAAGCTC
TATCGGAGCAAGAGAAGGGTCTTTCAACATTGTCCTGAAATCCTCACAAT
CACCATCAAAATAGGCCTTCAAAAAAGCCGCAGCAATGCCAGCAACACAT
CTCCTCATGGGATCCCTTGGTTTCTTTCCATTCGTGCACAAAAATTTTGA
AATTGCCCAATTCTTTGGTCCCTGGGGATTATCATCTAAAATGTCCATGT
GACCATAATCCTTAGCATCAAAATGAGCATGATCTGAATATGTACACCTC
TTGAAAAATTGCTCATGGTTTTTGTTTTCCGGTGCACAAGGCTGCATGCA
CTTTGTCACACCACCGAGTCCGGTGCCAATTACAGTAACAGGAATTGAGA
ACTCGAATGAGTCATGACTGAGAATCGGGGGTTCAAGTTCACTATGAACG
CTGGCTAACCCCGCAACTGGGTCTATGCCTACTAATGCTGAAATTTTAAT
GCTAACTGGAGGATTTGTTGCATAGCCAAGTGCCAGACCGAACGCTATTA
GTCCTCCGCGACTGTGTCCCATAAGAGCAACGTAGTTTAGGTTAGCTTCA
ACATTTTCCGGGAGTTCTGATTGAAGGCCTGTTGATAACCAGTTGAGGAC
GTTTGCTGCATCGTTAACTTCTCCGTTTCCTTTC
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