CX043307

Overview
NameCX043307
Unique NameCX043307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043307_ssr15 microsatellite CX043307_ssr15:15..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3564 contig Csv1_Contig3564:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.078e-63
Identity = 125/172 (72.67%), Postives = 135/172 (78.49%), Query Frame = 1
Query:  223 MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSSHXXXXXXXXXXXXXXXKLVASQ-TKPIYD----MDLAHYEESMWTC 723
            MKES RKQGA SPCAACKLLRRRCAQDCVF+PYFPADEPQKFANVH+VFGASNVNKMLQELP+HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQ QLALAQAEVVHLRVRQ+ +   H               K V+ Q  K ++     +D A   ESMW+C
Sbjct:    1 MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWSC 172          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.529e-46
Identity = 86/116 (74.14%), Postives = 103/116 (88.79%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSSH 603
            SPCA+CKLLRRRCA+DC+FAPYFP D+P KFA VHKVFGASNV+KMLQELPVHQR DAV+S+V+EANARVRDPVYGCVGAIS LQNQ+  LQ QLA+AQAE++ ++++   +L SH
Sbjct:    7 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.968e-42
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 1
Query:  223 MKESGRKQGAP-SPCAACKLLRRRCAQD-CVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLR 573
            M++ G + G   SPCA CKLLRR+C +D CVFAPYFPA EP KFA VHK+FGASNVNKMLQEL  + R DAV SMVYEANAR++DPVYGCVG ISSL  Q++ LQTQLA AQAE++H+R
Sbjct:    1 MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 8.562e-37
Identity = 69/112 (61.61%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTAS 591
            +PCAACKLLRRRCAQ+C F+PYF   EP KFA+VHKVFGASNV+KML E+P  QR DA +S+VYEAN R+RDPVYGC+GAIS+LQ Q+  LQ +L   ++E++  + R+  +
Sbjct:   44 TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVA 155          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.118e-36
Identity = 72/112 (64.29%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTAS 591
            SPCAACK LRR+C   C+FAPYFP +EP KFANVHK+FGASNV K+L EL  HQR DAV+S+ YEA ARVRDPVYGCVGAIS LQ Q+  LQ +L  A A++ H  +  +A+
Sbjct:   10 SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAA 121          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.248e-36
Identity = 71/110 (64.55%), Postives = 86/110 (78.18%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQT 585
            SPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELP  QR DAV+SMVYEA AR+RDPVYGC GAI  LQ Q+  LQ QLA AQ E+V+++ +++
Sbjct:   32 SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRS 141          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.754e-35
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL 594
            SPCAACK+LRRRCA  CV APYFP  +P KF   H+VFGASN+ K LQELP  QR DAV+SMVYEA AR+RDPVYGC GAI  LQ Q+  LQ QLA  Q E+V +++++++ L
Sbjct:   51 SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLL 163          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.698e-35
Identity = 67/115 (58.26%), Postives = 91/115 (79.13%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSS 600
            +PCAACKLLRRRCA++C F+PYF   EP KFA VHKVFGASNV+KML E+   QRGDA +S+VYEAN R+RDP+YGC+GAIS+LQ+ I  LQ++L   + E++  + ++  +++S
Sbjct:   51 TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITS 165          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.014e-35
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 561
            SPCAACK LRR+C  +CVFAPYFP D+PQKFANVHKVFGASNV K+L EL   QR DAV+S+ YEA+ R+RDPVYGCVG IS LQ+Q+  LQ  L+ A++E+
Sbjct:    8 SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSEL 109          
BLAST of CX043307 vs. ExPASy Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.367e-34
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  256 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVV 564
            SPCAACK LRR+C  DCVFAPYFP +EP KFANVH++FGASNV+K+L E+  HQR DAV+S+ YEA AR++DPVYGCVGAIS LQ Q+  LQ +L    A+++
Sbjct:   38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140          
The following BLAST results are available for this feature:
BLAST of CX043307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LBD4_ARATH4.078e-6372.67LOB domain-containing protein 4 OS=Arabidopsis tha... [more]
LBD12_ARATH4.529e-4674.14LOB domain-containing protein 12 OS=Arabidopsis th... [more]
LBD3_ARATH3.968e-4269.75LOB domain-containing protein 3 OS=Arabidopsis tha... [more]
LBD15_ARATH8.562e-3761.61LOB domain-containing protein 15 OS=Arabidopsis th... [more]
LOB_ARATH1.118e-3664.29Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis th... [more]
LBD1_ARATH7.248e-3664.55LOB domain-containing protein 1 OS=Arabidopsis tha... [more]
LBD11_ARATH2.754e-3562.83LOB domain-containing protein 11 OS=Arabidopsis th... [more]
LBD13_ARATH4.698e-3558.26LOB domain-containing protein 13 OS=Arabidopsis th... [more]
LBD6_ARATH8.014e-3567.65LOB domain-containing protein 6 OS=Arabidopsis tha... [more]
LBD25_ARATH1.367e-3465.05LOB domain-containing protein 25 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B11-D22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043307 ID=CX043307; Name=CX043307; organism=Citrus sinensis; type=EST; length=798bp
CTCTTTTGCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCCTCTTT
ACTGTATCTTTCAACTCTCTTTTGCGTTTAATTAAGCTTCCAAATCTAAA
CATATGCTATAACCCTAAAAATTCCTTTTGGCTTTTATTTTAAGGGAAAG
TGCCCTAGGTGGTGCCTTAAATTCTTAACAGGGTAGATACTTAGTGGGGT
TTAGGGGGGGACACGTGGCAGGATGAAGGAGAGTGGTAGGAAACAAGGTG
CACCATCACCATGTGCAGCATGCAAGCTTCTAAGGAGAAGGTGTGCCCAG
GATTGCGTTTTTGCCCCTTATTTTCCAGCTGATGAGCCTCAGAAATTTGC
TAATGTGCACAAGGTTTTTGGTGCTAGCAATGTCAACAAGATGCTACAGG
AATTGCCAGTGCACCAAAGAGGAGATGCTGTGAGCAGCATGGTGTATGAA
GCGAACGCAAGAGTTCGTGATCCAGTGTACGGTTGCGTTGGAGCCATTTC
GTCTCTGCAAAATCAAATAGACGTGCTACAGACCCAATTGGCCCTGGCTC
AAGCCGAGGTGGTGCACTTACGGGTTCGCCAAACTGCGTCCTTGTCGAGC
CACGGGTTCGGCCCGGCTAGCCCAAGCAACAGCGGCTCTCCCTCGTCCAA
GCTCGTGGCTTCTCAGACCAAGCCCATCTACGACATGGACTTGGCTCATT
ATGAGGAATCAATGTGGACTTGTTAGCTAGCCACTCTCATATTTTATAAA
CGCATTTTATATATCTAGATATATTTAGAGTTTTCTTTTTCTTTTTTT
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