DC900142

Overview
NameDC900142
Unique NameDC900142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7745 contig Csv1_Contig7745:120..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.565e-36
Identity = 68/74 (91.89%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 222
            KRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:   10 KRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.565e-36
Identity = 68/74 (91.89%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 222
            KRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:   10 KRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.765e-36
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 222
            KRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQ
Sbjct:   10 KRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQ 83          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.783e-28
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 222
            KR NKTHTLC RCGR S+H+QKS CA C YPAA+ R+YNWSVKA RRKTTGTGRM++L+ V RRF++GFREGTQ
Sbjct:   10 KRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQ 83          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_SPOFR (60S ribosomal protein L37 OS=Spodoptera frugiperda GN=RpL37 PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27
Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 216
            KRRNKTHTLC RCGR S+H+QKS+CA C YPAA+ R+Y+WSVKA RRKTTGTGRMR+L+ V RRF++GF+EG
Sbjct:   10 KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEG 81          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37A_YEAST (60S ribosomal protein L37-A OS=Saccharomyces cerevisiae GN=RPL37A PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.605e-27
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            KR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:   10 KRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_RAT (60S ribosomal protein L37 OS=Rattus norvegicus GN=Rpl37 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            KRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:   10 KRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_MOUSE (60S ribosomal protein L37 OS=Mus musculus GN=Rpl37 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            KRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:   10 KRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_HUMAN (60S ribosomal protein L37 OS=Homo sapiens GN=RPL37 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            KRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:   10 KRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of DC900142 vs. ExPASy Swiss-Prot
Match: RL37_BOVIN (60S ribosomal protein L37 OS=Bos taurus GN=RPL37 PE=3 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 2.504e-26
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 KRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 219
            KRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:   10 KRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
The following BLAST results are available for this feature:
BLAST of DC900142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL373_ARATH1.565e-3691.8960S ribosomal protein L37-3 OS=Arabidopsis thalian... [more]
RL372_ARATH1.565e-3691.8960S ribosomal protein L37-2 OS=Arabidopsis thalian... [more]
RL371_ARATH7.765e-3691.8960S ribosomal protein L37-1 OS=Arabidopsis thalian... [more]
RL371_DROME7.783e-2874.32Probable 60S ribosomal protein L37-A OS=Drosophila... [more]
RL37_SPOFR3.862e-2773.6160S ribosomal protein L37 OS=Spodoptera frugiperda... [more]
RL37A_YEAST8.605e-2769.8660S ribosomal protein L37-A OS=Saccharomyces cerev... [more]
RL37_RAT2.504e-2672.6060S ribosomal protein L37 OS=Rattus norvegicus GN=... [more]
RL37_MOUSE2.504e-2672.6060S ribosomal protein L37 OS=Mus musculus GN=Rpl37... [more]
RL37_HUMAN2.504e-2672.6060S ribosomal protein L37 OS=Homo sapiens GN=RPL37... [more]
RL37_BOVIN2.504e-2672.6060S ribosomal protein L37 OS=Bos taurus GN=RPL37 P... [more]

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Properties
Property NameValue
Genbank descriptionDC900142 VSS Citrus sinensis cDNA clone VS27V62 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900142 ID=DC900142; Name=DC900142; organism=Citrus sinensis; type=EST; length=487bp
AAGAGGAGAAACAAGACACACACTTTGTGTGTGCGATGTGGCCGTCGCAG
CTTCCATCTTCAGAAGAGTCGTTGCGCTGCTTGTGCTTACCCCGCTGCTC
GCAAGAGAACGTATAACTGGAGTGTGAAGGCAATCCGAAGAAAGACCACT
GGAACCGGCAGGATGAGGTATCTGCGCCATGTACCTCGCAGGTTCAAGAG
CGGCTTCAGAGAAGGTACTCAGGCAGCACCAAGGAAGAAGGGAGCGGCTG
CCTCTGCTTAAGGAGTTGAAGGGTAATTTTGGGCGTGAATCAGCACCTCA
TTATAGATTTAGTCTTCTTTAATGTGTGGAGACAAGATTCATGGGAACAT
AATTTTGAAAAAGGATGTTATTTGTTTTTGTGCTTAGTTGTTTTCAATTA
TGATTACTCTGTAGTCTTTTTCAATTTTGGACAAGATGAATGAGTTTATT
GTTGTTTGACCTCCTTTAATTACTTCATGTTTTGACA
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