CN186043

Overview
NameCN186043
Unique NameCN186043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186043 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.267e-63
Identity = 121/192 (63.02%), Postives = 148/192 (77.08%), Query Frame = 1 
Query:  223 NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMLESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGG--DATTSADNAGADEAGNEDESIVHHTASVGDAEG*K 792
            N FDFS M+ +LNDPSI+E+AEQIAKDPAFN +AEQLQ+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  L++ +NP   +   ERMA++KEDP LKPILDEI++GGPSAMMKYWND +VL+KLGEAMG+ V G  D T SA+   A+E G E+ESIVH TAS+GD EG K
Sbjct:   45 NAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSNPETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWNDPEVLKKLGEAMGMPVAGLPDQTVSAEPEVAEE-GEEEESIVHQTASLGDVEGLK 235
The following BLAST results are available for this feature:
BLAST of CN186043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH3.267e-6363.02Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002E11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186043 ID=CN186043; Name=CN186043; organism=Citrus sinensis; type=EST; length=821bp
GCGTTCCCAATCTAATCTCAATCTCCTTCACAGTCTCTCCGATTCAGCAG
CTGTTTAGTTCGCATGGCGTCTCCTCCCACCAAGGATGCTCCCGCTGATA
AGAAAGCAGAAGGATCGACCCCTAAGTCAGAAGCAACTTCGGGGTCTGTT
AGAGACTCATCTAGTTCGCCTTCCGGTGCTTCTGCTGCAAGTGCTTTTCC
AGGAGTTGGTGGCGCTGCTCCAAATCCTTTTGATTTCTCCGCCATGAGTG
GCCTTCTTAATGATCCGAGCATTAAGGAACTAGCTGAACAGATTGCGAAA
GATCCAGCATTCAATTCCATGGCCGAGCAACTTCAGAAAACTTTGCATGG
TGCAAATGCTGAGGAGAGTATTCCACAGTTTGACACAACACAGTATTACT
CCACCATGCAACAGGTTATGCAGAATCCTCAGTTTATGACTATGGCTGAG
CGCCTTGGTAATGCTTTAATGCAGGACCCATCAATGTCTCATATGCTGGA
GAGTTTGACAAACCCTACAAAAAAAGACCAGATCGAGGAAAGAATGGCAA
AAATCAAGGAAGATCCCTCTTTGAAGCCTATTTTGGATGAGATAGAGTCT
GGTGGACCATCTGCTATGATGAAGTACTGGAATGATAAAGATGTTTTGCA
GAAATTGGGTGAAGCAATGGGTCTTGCAGTTGGTGGGGATGCGACCACTT
CTGCTGATAATGCGGGGGCAGATGAAGCGGGAAATGAGGATGAGTCAATT
GTTCATCACACTGCCAGTGTTGGTGATGCTGAGGGTTGAAAAATGCATTG
GCAGCTGGTGCTGATAAAGAT
back to top