CN186039

Overview
NameCN186039
Unique NameCN186039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.479e-90
Identity = 161/180 (89.44%), Postives = 170/180 (94.44%), Query Frame = -1
Query:  191 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEASM 730
            EKLVGVPVI +HIWFDRKLKNTYDHLLFSRSSLLSVYADMS+TCKEYYNPNQSMLELVFAPAEEWIS SDSEIIDATMKELA LFPDEISADQSKAKI+KYHV+KTPRSVYKT+P CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY LL  R + +L EAS+
Sbjct:  403 EKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDSEIIDATMKELATLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLVGRSQKKLSEASV 582          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.000e-88
Identity = 156/180 (86.67%), Postives = 171/180 (95.00%), Query Frame = -1
Query:  191 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEASM 730
            +KLVGVPVI +HIWFDRKLKNTYDHLLFSRS+LLSVYADMSLTCKEYY+PN+SMLELVFAPAEEWIS +DS+IIDATMKEL KLFPDEISADQSKAKI+KYHV+KTPRSVYKTIPNCEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGK C+Q+IVQDY LLAA G  +L EA++
Sbjct:  384 DKLVGVPVINVHIWFDRKLKNTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCSQSIVQDYELLAASGPRKLSEATV 563          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.537e-87
Identity = 155/180 (86.11%), Postives = 169/180 (93.89%), Query Frame = -1
Query:  191 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEASM 730
            +KLVGVPVI +HIWFDRKLKNTYDHLLFSRS LLSVYADMS+TCKEYY+PNQSMLELVFAPAEEWIS SD +II ATM ELAKLFPDEISADQSKAKI+KYHV+KTPRSVYKT+PNCEPCRP+QRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD  LLA RG+ R+ +AS+
Sbjct:  390 DKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLATRGQKRMAKASV 569          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.906e-85
Identity = 155/180 (86.11%), Postives = 167/180 (92.78%), Query Frame = -1
Query:  191 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEASM 730
            EKLVGVPVI +HIWFDRKLKNT D+LLFSRS LLSVYADMS+TCKEYY+PN+SMLELVFAPAEEW+S SDSEIIDATMKELAKLFPDEISADQSKAKI+KYHV+KTPRSVYKT+P CEPCR LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY LL  R + +L E S+
Sbjct:  402 EKLVGVPVINVHIWFDRKLKNTSDNLLFSRSPLLSVYADMSVTCKEYYDPNKSMLELVFAPAEEWVSRSDSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLVGRSQRKLAETSV 581          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.546e-85
Identity = 150/175 (85.71%), Postives = 165/175 (94.29%), Query Frame = -1
Query:  206 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRL 730
            EKLVGVPVI +HIWFDRKL NTYDHLLFSRSSLLSVYADMS+TCKEYY+PN+SMLELVFAPA+EWI  SD+EIIDATM+ELAKLFPDEI+ADQSKAKI+KYH++KTPRSVYKT+PNCEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ+IVQDY  LA R +  L
Sbjct:  388 EKLVGVPVINVHIWFDRKLNNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYSRLALRSQKSL 562          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.614e-84
Identity = 150/172 (87.21%), Postives = 163/172 (94.77%), Query Frame = -1
Query:  215 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGK 730
            +KLVGVPVI +HIWFDRKLKNTYDHLLF+RS LLSVYADMS+TCKEYY+PN+SMLELVFAPAEEWIS SDSEII+ TMKELAKLFPDEI+ADQSKAKI+KYHV+KTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYT QKYLASMEGAVLSGKLCAQ+IVQDY LL  R K
Sbjct:  389 DKLVGVPVINVHIWFDRKLKNTYDHLLFTRSPLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQKYLASMEGAVLSGKLCAQSIVQDYELLVRRSK 560          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 2.108e-84
Identity = 147/170 (86.47%), Postives = 165/170 (97.06%), Query Frame = -1
Query:  221 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 730
            EKLVGVPVI +HIWFDRKLKNTYDHLLFSRSSLLSVYADMS+TCKEYY+PN+SMLELVFAPAEEW+  SD+EII+ATM+ELAKLFPDEI+ADQSKAKI+KYHV+KTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ++V+DY +L+ R
Sbjct:  396 EKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRR 565          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 2.108e-84
Identity = 147/170 (86.47%), Postives = 165/170 (97.06%), Query Frame = -1
Query:  221 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 730
            EKLVGVPVI +HIWFDRKLKNTYDHLLFSRSSLLSVYADMS+TCKEYY+PN+SMLELVFAPAEEW+  SD+EII+ATM+ELAKLFPDEI+ADQSKAKI+KYHV+KTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ++V+DY +L+ R
Sbjct:  396 EKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRR 565          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.286e-53
Identity = 104/162 (64.20%), Postives = 126/162 (77.78%), Query Frame = -1
Query:  239 LVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 724
            L GVPVI +H+WFDRKL +  DHLLFSRS LLSVYADMS TC+EY +P++SMLELV APA++WI  SD EI+ ATM E+ +LFP   + D + A+++K HV+KTPRSVYK  P  + CRP QR+ V  FYLAGD+T QKYL SMEGAVLSGK CAQAI  D+
Sbjct:  298 LEGVPVINLHLWFDRKLTDI-DHLLFSRSPLLSVYADMSNTCREYSDPDKSMLELVLAPAQDWIGKSDEEIVAATMAEIKQLFPQHFNGD-NPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLGSMEGAVLSGKQCAQAIAADF 457          
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.072e-51
Identity = 107/177 (60.45%), Postives = 129/177 (72.88%), Query Frame = -1
Query:  194 LVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEAS 724
            L GVPVI IH+WFDRKL +  DHLLFSRS LLSVYADMS TC+EY +P++SMLELVFAPA++WI  SD +I+ ATM E+ KLFP   S  ++ A++ KY ++KTP SVYK  P  +  RP Q SP+  F+L GDYT Q+YLASMEGAVLSGKL AQAI+     L  R  GR   AS
Sbjct:  298 LQGVPVINIHLWFDRKLTDI-DHLLFSRSPLLSVYADMSNTCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQHFSG-ENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIIARQDELQRRSSGRPLAAS 472          
The following BLAST results are available for this feature:
BLAST of CN186039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_SOLLC7.479e-9089.44Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH7.000e-8886.67Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOYBN4.537e-8786.11Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_CAPAN1.906e-8586.11Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE5.546e-8585.71Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_NARPS1.614e-8487.21Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSJ2.108e-8486.47Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI2.108e-8486.47Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SYNY34.286e-5364.20Phytoene dehydrogenase OS=Synechocystis sp. (strai... [more]
CRTI_SYNE73.072e-5160.45Phytoene dehydrogenase OS=Synechococcus elongatus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186039 ID=CN186039; Name=CN186039; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTAGGGGAGTCAATTTCTATTGAAGAATGATTCACTTGAAGAGTT
TGACAAGTTGTTATCAGTTATTTTACAATTCTTTTTTTTTTTTTCCTTTT
AATCGAGTTGACAAATCATATCTATATTGTTTAATAATTACCTTTGACAT
TCAAGCTCCAATTATAAACCCTGCCTCCAGCTTATGGACACATGCTTGCC
TCAGGCAATCTCCCTTTCCCCCGTGCAGCAAGCAGCACATAGTCCTGTAC
AATTGCTTGTGCACAAAGCTTCCCTGACAAAACAGCACCTTCCATTGAAG
CCAAATACTTCTGTTTTGTGTAATCCCCGGCTAAATAAAACCCTTCTACA
GGAGACCTTTGTAAGGGACGGCAAGGTTCACAATTTGGGATGGTTTTATA
TACAGACCTTGGCGTTTTGAGGACGTGGTACTTCACAATCTTTGCTTTGC
TCTGATCAGCAGAAATTTCATCAGGAAATAGTTTTGCAAGCTCCTTCATT
GTAGCATCAATGATTTCTGAGTCACTGCATGAGATCCACTCTTCAGCCGG
GGCAAAAACTAACTCCAGCATGGATTGATTGGGGTTGTAATACTCCTTAC
AAGTTAAAGACATGTCGGCATACACACTTAGAAGGGAACTTCTGCTAAAG
AGTAGGTGATCATAAGTGTTTTTCAATTTCCTGTCAAACCATATGTGGAT
GGTGATGACTGGAACTCCCACCAATTTCTC
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