CN186039
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 7.479e-90 Identity = 161/180 (89.44%), Postives = 170/180 (94.44%), Query Frame = -1 Query: 191 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEASM 730 EKLVGVPVI +HIWFDRKLKNTYDHLLFSRSSLLSVYADMS+TCKEYYNPNQSMLELVFAPAEEWIS SDSEIIDATMKELA LFPDEISADQSKAKI+KYHV+KTPRSVYKT+P CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY LL R + +L EAS+ Sbjct: 403 EKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDSEIIDATMKELATLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLVGRSQKKLSEASV 582
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 7.000e-88 Identity = 156/180 (86.67%), Postives = 171/180 (95.00%), Query Frame = -1 Query: 191 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEASM 730 +KLVGVPVI +HIWFDRKLKNTYDHLLFSRS+LLSVYADMSLTCKEYY+PN+SMLELVFAPAEEWIS +DS+IIDATMKEL KLFPDEISADQSKAKI+KYHV+KTPRSVYKTIPNCEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGK C+Q+IVQDY LLAA G +L EA++ Sbjct: 384 DKLVGVPVINVHIWFDRKLKNTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCSQSIVQDYELLAASGPRKLSEATV 563
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 4.537e-87 Identity = 155/180 (86.11%), Postives = 169/180 (93.89%), Query Frame = -1 Query: 191 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEASM 730 +KLVGVPVI +HIWFDRKLKNTYDHLLFSRS LLSVYADMS+TCKEYY+PNQSMLELVFAPAEEWIS SD +II ATM ELAKLFPDEISADQSKAKI+KYHV+KTPRSVYKT+PNCEPCRP+QRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD LLA RG+ R+ +AS+ Sbjct: 390 DKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLATRGQKRMAKASV 569
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 1.906e-85 Identity = 155/180 (86.11%), Postives = 167/180 (92.78%), Query Frame = -1 Query: 191 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEASM 730 EKLVGVPVI +HIWFDRKLKNT D+LLFSRS LLSVYADMS+TCKEYY+PN+SMLELVFAPAEEW+S SDSEIIDATMKELAKLFPDEISADQSKAKI+KYHV+KTPRSVYKT+P CEPCR LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY LL R + +L E S+ Sbjct: 402 EKLVGVPVINVHIWFDRKLKNTSDNLLFSRSPLLSVYADMSVTCKEYYDPNKSMLELVFAPAEEWVSRSDSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLVGRSQRKLAETSV 581
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 5.546e-85 Identity = 150/175 (85.71%), Postives = 165/175 (94.29%), Query Frame = -1 Query: 206 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRL 730 EKLVGVPVI +HIWFDRKL NTYDHLLFSRSSLLSVYADMS+TCKEYY+PN+SMLELVFAPA+EWI SD+EIIDATM+ELAKLFPDEI+ADQSKAKI+KYH++KTPRSVYKT+PNCEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ+IVQDY LA R + L Sbjct: 388 EKLVGVPVINVHIWFDRKLNNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYSRLALRSQKSL 562
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1) HSP 1 Score: 312.383 bits (799), Expect = 1.614e-84 Identity = 150/172 (87.21%), Postives = 163/172 (94.77%), Query Frame = -1 Query: 215 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGK 730 +KLVGVPVI +HIWFDRKLKNTYDHLLF+RS LLSVYADMS+TCKEYY+PN+SMLELVFAPAEEWIS SDSEII+ TMKELAKLFPDEI+ADQSKAKI+KYHV+KTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYT QKYLASMEGAVLSGKLCAQ+IVQDY LL R K Sbjct: 389 DKLVGVPVINVHIWFDRKLKNTYDHLLFTRSPLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQKYLASMEGAVLSGKLCAQSIVQDYELLVRRSK 560
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2) HSP 1 Score: 311.997 bits (798), Expect = 2.108e-84 Identity = 147/170 (86.47%), Postives = 165/170 (97.06%), Query Frame = -1 Query: 221 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 730 EKLVGVPVI +HIWFDRKLKNTYDHLLFSRSSLLSVYADMS+TCKEYY+PN+SMLELVFAPAEEW+ SD+EII+ATM+ELAKLFPDEI+ADQSKAKI+KYHV+KTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ++V+DY +L+ R Sbjct: 396 EKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRR 565
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2) HSP 1 Score: 311.997 bits (798), Expect = 2.108e-84 Identity = 147/170 (86.47%), Postives = 165/170 (97.06%), Query Frame = -1 Query: 221 EKLVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 730 EKLVGVPVI +HIWFDRKLKNTYDHLLFSRSSLLSVYADMS+TCKEYY+PN+SMLELVFAPAEEW+ SD+EII+ATM+ELAKLFPDEI+ADQSKAKI+KYHV+KTPRSVYKTIP+CEPCRPLQRSP+EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ++V+DY +L+ R Sbjct: 396 EKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSVVEDYKMLSRR 565
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2) HSP 1 Score: 207.994 bits (528), Expect = 4.286e-53 Identity = 104/162 (64.20%), Postives = 126/162 (77.78%), Query Frame = -1 Query: 239 LVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 724 L GVPVI +H+WFDRKL + DHLLFSRS LLSVYADMS TC+EY +P++SMLELV APA++WI SD EI+ ATM E+ +LFP + D + A+++K HV+KTPRSVYK P + CRP QR+ V FYLAGD+T QKYL SMEGAVLSGK CAQAI D+ Sbjct: 298 LEGVPVINLHLWFDRKLTDI-DHLLFSRSPLLSVYADMSNTCREYSDPDKSMLELVLAPAQDWIGKSDEEIVAATMAEIKQLFPQHFNGD-NPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLGSMEGAVLSGKQCAQAIAADF 457
BLAST of CN186039 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 3.072e-51 Identity = 107/177 (60.45%), Postives = 129/177 (72.88%), Query Frame = -1 Query: 194 LVGVPVITIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVLKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLPEAS 724 L GVPVI IH+WFDRKL + DHLLFSRS LLSVYADMS TC+EY +P++SMLELVFAPA++WI SD +I+ ATM E+ KLFP S ++ A++ KY ++KTP SVYK P + RP Q SP+ F+L GDYT Q+YLASMEGAVLSGKL AQAI+ L R GR AS Sbjct: 298 LQGVPVINIHLWFDRKLTDI-DHLLFSRSPLLSVYADMSNTCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQHFSG-ENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIIARQDELQRRSSGRPLAAS 472 The following BLAST results are available for this feature:
BLAST of CN186039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186039 ID=CN186039; Name=CN186039; organism=Citrus sinensis; type=EST; length=730bpback to top |