CN186012

Overview
NameCN186012
Unique NameCN186012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN186012 vs. ExPASy Swiss-Prot
Match: GPA2_PEA (Guanine nucleotide-binding protein alpha-2 subunit OS=Pisum sativum GN=GPA2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = -3 
Query:  498 DYDQFSVDANGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLYEEKIENVPLNQCDWFDDFHPV 704
            +YDQ   +      N++M +++ FE I+  P F++  F+L LNK+D++E+KI NVPLN C+WF D+ PV
Sbjct:  248 EYDQTLFEDESK--NRLMETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILNVPLNVCEWFKDYQPV 314
[Close]
BLAST of CN186012 vs. ExPASy Swiss-Prot
Match: GPA2_SOYBN (Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = -3 
Query:  498 DYDQFSVDANGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLYEEKIENVPLNQCDWFDDFHPV 704
            +YDQ   +      N+MM +++ FE I+  P F++  F+L LNK+D++E+KI  VPLN C+WF D+ PV
Sbjct:  249 EYDQTLFEDENR--NRMMETKELFEWILKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCEWFKDYQPV 315
[Close]
BLAST of CN186012 vs. ExPASy Swiss-Prot
Match: GPA1_LOTJA (Guanine nucleotide-binding protein alpha-1 subunit OS=Lotus japonicus GN=GPA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = -3 
Query:  498 DYDQFSVDANGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLYEEKIENVPLNQCDWFDDFHPV 704
            +YDQ   +      N+MM +++ FE ++  P F++  F+L LNK+D++E+KI  VPLN C+WF D+ PV
Sbjct:  248 EYDQTLFEDENK--NRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCEWFKDYQPV 314
The following BLAST results are available for this feature:
BLAST of CN186012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GPA2_PEA1.716e-1143.48Guanine nucleotide-binding protein alpha-2 subunit... [more]
GPA2_SOYBN4.993e-1143.48Guanine nucleotide-binding protein alpha-2 subunit... [more]
GPA1_LOTJA4.993e-1142.03Guanine nucleotide-binding protein alpha-1 subunit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186012 ID=CN186012; Name=CN186012; organism=Citrus sinensis; type=EST; length=706bp
AAAAAGTGTCTCCATAGACAAGACGAAATGTTCCATACGTGCAGCTACTC
CAATTAATGAACCATATCAGCATGACAGTCAAAATAATACCTAAAAGGTT
TGGGAAAGCTTACAGCATTGGGTCATGGAAGGGAACGCTCTCTCTGTTCA
TTTACATACTATTGCATATGTACACTCTTAGGACCCATTGTACAAGGCTT
TTCTGATTATCAATGAGAGAAGGAGCTTGCCTCAGTGCTGTACATCCAGT
ACTCACTAATGCTAAAGATGGTTTTCTCTTCATCCCACTTTAGAACCTCC
CTTGCATATTTAAGAGCAGCATCGACACTATTAGGCTCCAATCCCTTCAC
CAGGGAAACATACAATTTCCGCCCAGTGAGAGATGAATAAAGCCTCTTGA
ACTTGACAGCAACATACTGGGAAGCCAGCTGACCTACTGAGGGGCTATGA
TTGATGTTGTTGCTGTTTCTGTTGCCATTGGGGTGATGACGGCTGATCAC
TGGATGAAAATCATCAAACCAGTCGCACTGGTTCAACGGTACATTTTCTA
TTTTTTCCTCATACAGATCATATTTGTTTAGTATCAAAAGAAATTCCATC
TGATCAAAAGTTGGATGTGTAACAATGCTTTCAAAGAATTTCCTGCTCAG
CATCATCTTGTTCATAAGTGACCCATTCGCGTCAACAGAAAATTGGTCAT
AGTCAC
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