CN185978

Overview
NameCN185978
Unique NameCN185978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185978 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.627e-34
Identity = 74/153 (48.37%), Postives = 102/153 (66.67%), Query Frame = -3 
Query:  298 ALCVQCLSGYGHAIRNEHQ-LAVTXXXXXXXXXXXXXAFVGKLTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWPMSNVQTWVSAALTDENPCLDGFDGRFMDGNVKAAIRRRVTNVAQVTSNALALVNRFAARHQ 753
            A+C Q LS Y   I+N  Q LA T              F+ +L K +G+K R++ A+ DC+E + D +DR+S+S  E+ ++  A G DFT+ MSNV+TWVSAALTDE  C+DGF G+ MDG +K ++R +V  VA+VTSNALALVN FAA+H+
Sbjct:   40 AVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKHK 192
The following BLAST results are available for this feature:
BLAST of CN185978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA1.627e-3448.3721 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185978 ID=CN185978; Name=CN185978; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTAGCTTCCCCTATTTTTATTTTATTTAAACAAAA
CTCAAGTATCTTAAAAGCGGGAAAAAAAACAACAACAACCGCAGCAGCAG
CAGCAAAACACAAACTCTTATGTTTAGATACTGACTGGACTTTTTGTTGG
GTGCCCAAAAAACCAAACTTTCTTATATAAGACAGAAACTAGACTAAGCA
CGAACCTAAGGGATATCATATTGAGATACCATATTATACAGAAAACAGCA
AAGGTCACCTTAAACGAAATCTAAGGCTTCTCGGTGACTGCTGCAGCTTG
GTGCCTAGCGGCGAATCGATTAACCAAAGCAAGAGCGTTACTAGTGACTT
GGGCAACATTTGTGACCCTTCTCCTGATCGCAGCCTTTACATTTCCATCC
ATGAAACGACCATCAAAACCATCTAAGCAAGGGTTCTCATCAGTTAGTGC
GGCACTAACCCAAGTCTGCACATTACTCATGGGCCACGTAAAGTCCTGGC
CGACAGCTCGTCCCACATGGCCAAGCTCCCTGACGGATTGACTAAGTCGG
TCTACGCCGTCACCCATGTTCTCTATGCAGTCTTTCACAGCTAGGAACTC
TCTCTTCTTGATTCCCCTAACTTTAGTCAGCTTGCCCACAAAAGCAGCAG
CTGACCGTGCCCTGCTTAAGCTCACTGACAAGGCAGTTACAGCAAGCTGA
TGCTCATTTCGGATGGCATGACCATAACCTGAGAGGCACTGAACGCATAA
CGCTG
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