CN185973

Overview
NameCN185973
Unique NameCN185973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3_SYNS3 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9311) GN=infC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  373 YNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQVVDE 663
            Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A +++  K   RN+ + L P KA   K     K KD++VV++
Sbjct:  104 YKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAEVLLRRMAKDLEEPAEVQQPPKREGRNMIMFLTPRKAPLVK-----KDKDEEVVNK 196          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3C_EUGGR (Translation initiation factor IF-3, chloroplastic OS=Euglena gracilis PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.875e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  361 SYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGEL--AIEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQVVDEVSTG 666
            S+ I QHDY VR+K ARKFL+ G ++KV +  KGREN+F  I   +++RFQND+ ++  A    KK   R I  +    +AL   A+   ++  K   +E   G
Sbjct:  395 SHKIGQHDYDVRVKQARKFLEGGHRIKVSMEFKGRENQFVEIGRAVMKRFQNDLADMGKADAVPKKLGTRLILNLAPAGEALKVIAERRAERDRKAAAEEEGEG 498          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3_SYNSC (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9605) GN=infC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.159e-11
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  382 YNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQV 663
            Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A I++  K   RN+ + L P K    K +E  +  +K V
Sbjct:  104 YKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEEKEQAANKAV 198          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3_SYNP2 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.159e-11
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  430 YNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA 663
            Y I++HDY VR+ +A++FLK GDKVK  +  +GRE +  N+A +L+ R   D+ E+  I++  K   RN+ +IL P K+
Sbjct:   99 YKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMMILAPKKS 177          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.977e-11
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  433 YNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 663
            Y ID+HDY+VR+  A++FLK GDKVK  +  +GRE +  N+A EL+ R   D+ ++A +++  K   RN+ ++L P K
Sbjct:   99 YKIDEHDYNVRVNQAQRFLKAGDKVKATITFRGREIQHSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3_THETN (Translation initiation factor IF-3 OS=Thermoanaerobacter tengcongensis GN=infC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.582e-11
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  433 SYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 666
            S NI+ HD+ V+LK+A KFLKDGDKVKV +  +GRE    ++A +L++RF  ++ E   +E+      RN+ +++ P K
Sbjct:  101 SPNIEDHDFGVKLKSAIKFLKDGDKVKVTIRFRGREAAHTSLAEDLLKRFAEELREYGNVEKAPSMDGRNMMMVIAPKK 179          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3_SYNY3 (Translation initiation factor IF-3 OS=Synechocystis sp. (strain PCC 6803) GN=infC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.582e-11
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = -3
Query:  433 YNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVG-ELAIEENKKFRDRNIFIILVPNK 663
            Y ID+HDY VR+  A++FLK GDKVK  VN +GRE +  ++A EL+ R   D+  E  I++  K   RN+ + L P K
Sbjct:   99 YKIDEHDYQVRINQAKRFLKAGDKVKATVNFRGREIQHAHLAKELLDRMATDLATEADIQQAPKREGRNMMMFLSPKK 176          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3C_CYAME (Translation initiation factor IF-3, chloroplastic OS=Cyanidioschyzon merolae GN=infC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.373e-11
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = -3
Query:  430 SYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA 666
            SYN+++HDY VRL  A KFLK GDKVKV + LKGRE +   +A   + +FQ DV  LA + +      RN+  I VP K+
Sbjct:   96 SYNMEEHDYQVRLSQACKFLKAGDKVKVTLMLKGREMQHLELAQNKMAQFQADVSSLAQLAKPPSQEGRNLSAIFVPKKS 175          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3_PROMT (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL2A) GN=infC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.405e-11
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  376 YNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA--LSQKAQEPPKKKDKQVVD 663
            Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +   +A  L++R   D+ E A ++++ K   RN+ + L P K   L ++++    KK  + +D
Sbjct:  104 YKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLLKRMAKDLEEKAEVQQSPKREGRNMIMFLTPRKTPLLKKESEITEPKKALRTID 202          
BLAST of CN185973 vs. ExPASy Swiss-Prot
Match: IF3_PROM4 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9211) GN=infC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.405e-11
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = -3
Query:  382 YNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQV 663
            Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +  N+A  L+ R   D+ E A +++  K   RN+ + L P K        P  K +K+V
Sbjct:  104 YKIDQHDYEVRINQATRFLKAGDKVKCTVIFRGREIQHTNLAESLLARMAKDLEEQAEVQQTPKREGRNMIMFLTPRKT-------PLIKNEKEV 191          
The following BLAST results are available for this feature:
BLAST of CN185973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IF3_SYNS38.875e-1242.86Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3C_EUGGR8.875e-1238.46Translation initiation factor IF-3, chloroplastic ... [more]
IF3_SYNSC1.159e-1142.11Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_SYNP21.159e-1141.77Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_MICAN1.977e-1142.31Translation initiation factor IF-3 OS=Microcystis ... [more]
IF3_THETN2.582e-1141.77Translation initiation factor IF-3 OS=Thermoanaero... [more]
IF3_SYNY32.582e-1144.87Translation initiation factor IF-3 OS=Synechocysti... [more]
IF3C_CYAME3.373e-1147.50Translation initiation factor IF-3, chloroplastic ... [more]
IF3_PROMT4.405e-1138.38Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM44.405e-1141.05Translation initiation factor IF-3 OS=Prochlorococ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002C15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185973 ID=CN185973; Name=CN185973; organism=Citrus sinensis; type=EST; length=764bp
GCGTTTTTTTTTTGCGGAACAAATACCATGACTGGTCATCTCGCTTACAA
AATTTTAAAAATTGTTCTTGCTTCCAGAACAGCCTCACAGGAAACATATA
CATGCCCATTTACTGAACCTTGTATGACGTCTTGATTGTCTAAATAAAAA
AGAAGTAATGGATCTATCAAATGTTACAACTATTCGATCTGAAAAAGCTG
CTTATGTTATAGAATATCTAATAAATATGCCACACAGCTGTAACACACTA
ATTCTATACACGAATTTCAACACATCCCAGTCGAAAGGCACATATAAGGA
TTACCGGCCAATTTGTTATGTTGTCAAAACCCCACTTGGAATGGCTGAAT
GCACTCAGACACCAGTTGAGACTTCATCTACAACTTGTTTATCTTTCTTC
TTCGGTGGTTCTTGAGCCTTCTGTGAGAGGGCCTTATTTGGAACTAAAAT
TATAAATATATTCCTATCTCTGAATTTTTTGTTCTCCTCAATAGCAAGCT
CCCCAACATCATTCTGGAAACGTCGTATTAGCTCAATAGCAATATTTCTG
AATTCATTTTCCCGCCCTTTGAGGTTCACTATGACCTTAACCTTGTCTCC
ATCTTTCAGAAACTTCCTTGCAGCTTTTAGACGCACAGAATAATCATGCT
GGTCAATATTATAACTGTCAACAGAATTAAACATAACAAGTAAAACCATA
ACTTAGATATAAGAATGTTATAGCTTCAGAAATTTGGATAACAATCTTGA
CTGGAATGGTCACT
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