CN185930

Overview
NameCN185930
Unique NameCN185930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.026e-79
Identity = 149/227 (65.64%), Postives = 172/227 (75.77%), Query Frame = 1
Query:   82 AACSPLVPNPAH---NRLTAASSTVRF--RKISAVAAPPKP-------KTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            A  S  +P   H   +R+  ASST+    ++I     P  P       KTHSMPP+K+E+FKSLE WA  NVL  LKPVEKCWQPQDFLPDP      F DQV+ LRERT  +PD+Y VVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYL+GRVDM  IEKT+QYLI +GMDP +ENNPYLGF+YTSFQERATFISHG
Sbjct:   15 AVTSSGLPRSYHLRSHRVFMASSTIGITSKEIPNAKKPHMPPREAHVQKTHSMPPQKIEIFKSLEGWAEENVLVHLKPVEKCWQPQDFLPDPAS--EGFMDQVKELRERTKEIPDEYLVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLTGRVDMKQIEKTIQYLIGSGMDPRSENNPYLGFIYTSFQERATFISHG 239          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.646e-79
Identity = 137/178 (76.97%), Postives = 154/178 (86.52%), Query Frame = 1
Query:  193 THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            THSMPP+K+E+FKSLE WA  N+L  LKPVE+CWQPQDFLPD    F  F +QVR LRER   LPD+YFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  +EKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHG
Sbjct:   62 THSMPPQKMEIFKSLEDWAEENLLVHLKPVERCWQPQDFLPDSA--FEGFHEQVRELRERAKELPDEYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQVEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHG 237          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 3.455e-79
Identity = 148/229 (64.63%), Postives = 168/229 (73.36%), Query Frame = 1
Query:   52 QFLVTSTKPPAACSPLVPNPAHNRLTAASSTVRFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            Q + T+ +P   CSPL         T    +V    +    +PP+      THSMPPEK E+F SL  WA NN+L  LKPVEKCWQ  DFLPDP      F DQV+ LRER   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHG
Sbjct:   11 QSIKTTRRP---CSPLRSPRVFMASTLRPPSVEDGNVKKPFSPPREVHVQVTHSMPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFLPDPAS--EGFEDQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHG 234          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.697e-79
Identity = 141/204 (69.12%), Postives = 161/204 (78.92%), Query Frame = 1
Query:  127 TAASSTVRFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            T  S +     I     PP+      THSMPP+K+E+F+SLE WA  N+L  LKPVEKCWQPQDFLPDP+     F +QV+ LRER   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHG
Sbjct:   31 TLRSGSKEVENIKKPFTPPREVHVQVTHSMPPQKIEIFQSLEDWAEENILAHLKPVEKCWQPQDFLPDPSS--DGFEEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHG 232          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.697e-79
Identity = 136/178 (76.40%), Postives = 153/178 (85.96%), Query Frame = 1
Query:  193 THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQDFLPDP      F +QVR LRER   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHG
Sbjct:   62 THSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPAS--DGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHG 237          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.989e-78
Identity = 144/228 (63.16%), Postives = 170/228 (74.56%), Query Frame = 1
Query:   64 TSTKPPAACSPLVPNPAHNRLTAASSTVRFRKISAVAAPPKPKT-------HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            +S +PP +      +P    L ++S  +  +++ ++  P  P         HSMPP+K+E+FKS+E WA  N+L  LK VEK WQPQDFLPDP      F DQVR LRER   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHG
Sbjct:   17 SSARPPIST---FRSPKFLCLASSSPALSSKEVESLKKPFTPPKEVHVQVLHSMPPQKIEIFKSMEDWAEQNLLTQLKDVEKSWQPQDFLPDPAS--DGFEDQVRELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHG 239          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.111e-77
Identity = 137/204 (67.16%), Postives = 161/204 (78.92%), Query Frame = 1
Query:  127 TAASSTVRFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            T  SST +         PP+      THSMPP+K+E+FKS+E WA  N+L  LKPVEKCWQ QDFLPDP      F +QV+ LR R   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWA+W R+WTAEENRHGDLL ++LYLSGRVDM  I+KT+QYLI +GMDP TEN+PYLGF+YTSFQERATF+SHG
Sbjct:   36 TLGSSTPKVDNAKKPFQPPREVHVQVTHSMPPQKIEIFKSIEGWAEQNILVHLKPVEKCWQAQDFLPDPAS--EGFDEQVKELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAVWTRAWTAEENRHGDLLHTYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFVSHG 237          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 2.476e-77
Identity = 138/209 (66.03%), Postives = 164/209 (78.47%), Query Frame = 1
Query:  121 RLTAASSTVRFRKISAVAAPPKPK-------THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            R++ AS+     K+     P  P        THSMPP+K+E+FKSLE WA NN+L  LKPVEKCWQPQDFLPDP+     F ++V+ LRER+  +PD Y+V LVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WA+W R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHG
Sbjct:   28 RISMASTVGPSTKVEIPKKPFMPPREVHVQVTHSMPPQKIEIFKSLEDWAENNILVHLKPVEKCWQPQDFLPDPSS--EGFHEEVKELRERSKEIPDGYYVCLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHG 234          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.516e-77
Identity = 139/231 (60.17%), Postives = 173/231 (74.89%), Query Frame = 1
Query:   55 FLVTSTKPPAACSPLVPNPAH--NRLTAASSTV-RFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            F  + T  P +C  +    ++  +++ A +ST+ R +       PP+       HS+PP+K E+F SL+ WA  N+L LLKPVEK WQPQDFLPDP+     F D+V+ LRER   +PDDYFV LVGDM+TE+A+PTYQTM+NTLDGVRDETGAS + WA+W R+WTAEENRHGDLL  ++YL+GRVDM  IEKT+QYLI +GMDPGTENNPYLGF+YTSFQERATFISHG
Sbjct:    3 FAASHTASPYSCGGVAQRRSNGMSKMVAMASTINRVKTAKKPYTPPREVHLQVKHSLPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFLPDPSS--DGFYDEVKELRERAKEIPDDYFVCLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTTWAVWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTENNPYLGFLYTSFQERATFISHG 231          
BLAST of CN185930 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.204e-77
Identity = 134/182 (73.63%), Postives = 151/182 (82.97%), Query Frame = 1
Query:  181 PKPKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHG 726
            P   THSMPP K+E+FKSLE WA NN+L  LKPVEKCWQP DFLPDP      F +QV+ LRER   +PDDYFVVLVGDMITE+A+ TYQTM+NTLDG RDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IE+T+QYLI +GMDP TEN+PY GF+YTSFQERATFISHG
Sbjct:   58 PVQITHSMPPHKIEIFKSLEGWAENNILTHLKPVEKCWQPADFLPDPNS--DGFHEQVKELRERAKEIPDDYFVVLVGDMITEEALSTYQTMLNTLDGTRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIERTIQYLIGSGMDPHTENSPYRGFIYTSFQERATFISHG 237          
The following BLAST results are available for this feature:
BLAST of CN185930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_SIMCH2.026e-7965.64Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA2.646e-7976.97Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLCO3.455e-7964.63Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOYBN7.697e-7969.12Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_RICCO7.697e-7976.40Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA4.989e-7863.16Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CARTI1.111e-7767.16Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ELAGV2.476e-7766.03Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ORYSJ5.516e-7760.17Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI7.204e-7773.63Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185930 ID=CN185930; Name=CN185930; organism=Citrus sinensis; type=EST; length=727bp
CGTAAAAGACGCACACTCCCTGTGCTAAGTGCCACCACCACGTAAGCCTC
TCAGTTTCTCGTCACTTCCACCAAACCTCCTGCTGCGTGCTCTCCACTTG
TCCCAAATCCCGCCCACAATCGTCTAACCGCCGCATCCTCCACCGTCCGA
TTCCGGAAAATCTCTGCCGTCGCAGCACCACCGAAACCAAAAACACATTC
AATGCCACCCGAAAAAGTCGAAGTCTTCAAGTCACTAGAAACCTGGGCCA
CCAATAACGTGTTACCATTACTCAAACCAGTAGAGAAATGCTGGCAGCCC
CAAGACTTCTTACCCGATCCGACGCTGCCTTTTTCGGACTTCACTGACCA
AGTCAGGGCCCTACGTGAACGCACTGCGGGGCTACCTGACGATTACTTTG
TTGTGCTGGTGGGTGACATGATCACTGAAGACGCCATTCCCACTTATCAG
ACGATGATTAATACGCTCGATGGTGTCAGAGATGAGACCGGTGCAAGTTC
CAGCCCATGGGCTATTTGGAACCGCTCCTGGACTGCTGAGGAAAACCGCC
ATGGAGATTTGCTCAGGAGCTTCTTGTATTTGTCGGGTCGGGTCGATATG
CTCATGATTGAGAAGACTGTCCAGTATCTTATCAGTGCTGGCATGGACCC
TGGGACAGAGAACAACCCGTATTTGGGCTTTGTTTACACATCGTTTCAAG
AGCGCGCCACTTTCATATCACACGGCA
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