CN185907

Overview
NameCN185907
Unique NameCN185907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3530 contig Csv1_Contig3530:1287..2132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185907 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 1.276e-102
Identity = 183/200 (91.50%), Postives = 193/200 (96.50%), Query Frame = -3
Query:  244 ILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTHQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 843
            ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+ A+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILT QALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  382 ILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CN185907 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 372.859 bits (956), Expect = 1.276e-102
Identity = 185/200 (92.50%), Postives = 189/200 (94.50%), Query Frame = -3
Query:  244 ILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTHQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 843
            ILYECYEDV +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILT QALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  392 ILYECYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CN185907 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 4.849e-102
Identity = 181/199 (90.95%), Postives = 188/199 (94.47%), Query Frame = -3
Query:  247 ILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTHQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 843
            ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILT QA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  380 ILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CN185907 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.194e-100
Identity = 182/197 (92.39%), Postives = 188/197 (95.43%), Query Frame = -3
Query:  253 ILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTHQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 843
            ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+ QALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  398 ILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
BLAST of CN185907 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = -3
Query:  376 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTHQALVAVDN---DAPINGD 624
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F       AL  V N   D+  NGD
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF-----KDALKPVFNNLYDSVKNGD 356          
The following BLAST results are available for this feature:
BLAST of CN185907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_PEA1.276e-10291.50Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH1.276e-10292.50Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_ORYSJ4.849e-10290.95Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_SPIOL1.194e-10092.39Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_NEUCR5.148e-1145.35Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185907 ID=CN185907; Name=CN185907; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTGTCAGCGCATTCCTCGGAAACATACTATTACCC
CTCCAAATTCAAAAACCAGAAGCATATTCTCATGTCTTCTTCAACAAAAC
CGGACATAGTGCAACACTCGCCCAGCACACTAAATAAATAAGCGGCAACT
CACACGACTAAGCAAAGTCTCTACCTCCAATATCCCTAGGGGGAATTATT
TTTTGGGCTAGAAACAAAAAAATTAAGGACTCACCAGGACTCAATTGCTA
CCCTGACGCAACTCTGGGCGCACAAAATCTGCATCTGGTGGCACTGAAAT
GTCAACAGTTGGTCTCAACTGAGCACAGACTTCAATGGCTCCATGGACTG
GATCAGAAAGGAAGTTGCTGATGAGATCCCCATTGATGGGGGCATCATTG
TCCACTGCCACCAAGGCTTGGTGTGTCAGGATGTAATCAAAACGAGGGGC
CCATTTCCTTGATCCCAAACGGGCTGTGGTAGAGCAGTTGTCCACCATAA
ATGAAACTCCACGAGCATGCATGAATGGATTCAATGAATCCACTGACTCA
ATCACACTTTCATTGATGATCTCAGAATAGGAGTGCCCTTTCTTCCTCAG
GATCTCAATCTGGGCCATCATCAGAGCCGCATAAACACCTGCTGTGAATG
GGTGTAATGGGCCTAAGTCACCTGCTGGACGTGTTGATCGGACTCGCTCA
CCAACTTTCCACATGCGAGTCTGATCAATTTTTCCCATAGGGAAAGCTGG
TAGACCTTCCTTTTCATAAAACCGACGTCCAGCCAAGACAACACTGCGGA
TCTCACTGCCAGCGGCCACATCTTCATAGCACTCATATAAGATTT
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