CN185817

Overview
NameCN185817
Unique NameCN185817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:458..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDK1_ARATH (Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.514e-16
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSDSVESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct:  111 RNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE 148          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDKB_FLABI (Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSD+VESA+KEIALWFP+G  NW SSLHPWIYE
Sbjct:  111 RNVIHGSDAVESAKKEIALWFPEGVANWSSSLHPWIYE 148          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSD+VESA KEIALWFP+G +NWQSSLH WIYE
Sbjct:  111 RNVIHGSDAVESATKEIALWFPEGVVNWQSSLHSWIYE 148          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDK_HELAN (Nucleoside diphosphate kinase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSD+VESA+KEI LWFP+G  NW SSLHPWIYE
Sbjct:  111 RNVIHGSDAVESAKKEIGLWFPEGVANWSSSLHPWIYE 148          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSD+V+SA KEIALWFPDG ++WQSSLH WIYE
Sbjct:  111 RNVIHGSDAVDSATKEIALWFPDGVVHWQSSLHSWIYE 148          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.101e-13
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSDS+ESA KEIALWFP+G  +WQSS HPWIYE
Sbjct:  111 RNVIHGSDSIESANKEIALWFPEGLADWQSSQHPWIYE 148          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.101e-13
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSD+VESA KEIALWFP+G  NW+SSLH WIYE
Sbjct:  112 RNVIHGSDAVESANKEIALWFPEGAANWESSLHSWIYE 149          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDK1_TOBAC (Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSD+VESA+KEIALWFP+G   WQSSLH WIYE
Sbjct:  111 RNVIHGSDAVESARKEIALWFPEGVAEWQSSLHSWIYE 148          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDK_CAPAN (Nucleoside diphosphate kinase OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSD+VESA+KEIALWFP+G   WQSSLH WIYE
Sbjct:  111 RNVIHGSDAVESARKEIALWFPEGVAEWQSSLHCWIYE 148          
BLAST of CN185817 vs. ExPASy Swiss-Prot
Match: NDKA_FLABI (Nucleoside diphosphate kinase A OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 2
Query:    5 RNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 118
            RN+IHGSD+VESA+K I LWFP+G  NW SSLHPWIYE
Sbjct:  111 RNVIHGSDAVESARKVIGLWFPEGVANWSSSLHPWIYE 148          
The following BLAST results are available for this feature:
BLAST of CN185817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NDK1_ARATH4.514e-1686.84Nucleoside diphosphate kinase 1 OS=Arabidopsis tha... [more]
NDKB_FLABI1.229e-1381.58Nucleoside diphosphate kinase B OS=Flaveria bident... [more]
NDK1_MESCR1.606e-1381.58Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]
NDK_HELAN3.577e-1378.95Nucleoside diphosphate kinase OS=Helianthus annuus... [more]
NDK1_SPIOL4.672e-1378.95Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDK1_SACOF6.101e-1378.95Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK1_PEA6.101e-1378.95Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDK1_TOBAC1.359e-1278.95Nucleoside diphosphate kinase 1 OS=Nicotiana tabac... [more]
NDK_CAPAN2.319e-1278.95Nucleoside diphosphate kinase OS=Capsicum annuum P... [more]
NDKA_FLABI2.319e-1276.32Nucleoside diphosphate kinase A OS=Flaveria bident... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185817 ID=CN185817; Name=CN185817; organism=Citrus sinensis; type=EST; length=393bp
ATGCAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAG
AAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTT
CACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGT
TCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGG
TTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCA
ATCCTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATAT
TTAAGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTAGC
ACATGATGGTTGCACTTTTTATGTTTTAAAAAAAAAAAAAAAA
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