CN185804

Overview
NameCN185804
Unique NameCN185804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4631 contig Csv1_Contig4631:184..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2A_ARATH (Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.163e-87
Identity = 156/177 (88.14%), Postives = 170/177 (96.05%), Query Frame = -3
Query:  225 VHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRESVKD 755
            VHSIL+HK+NEDKIMVLDSHKL+AASGEPGDRVQFTE++QKNVSLY+FRNGIPLTTAAAANFTRGELATALRK+PY VNIL+AGYD E+G SLYYIDYIATLHKVDK AFGYGSYFSLS MDRH+ S MSVEEA++LVDKCILEIRSRLVVAPPNFVIKIVDKDGAR+YAWR+SVKD
Sbjct:   22 VHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVVAPPNFVIKIVDKDGARDYAWRQSVKD 198          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2B_ARATH (Proteasome subunit beta type-2-B OS=Arabidopsis thaliana GN=PBD2 PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.693e-85
Identity = 152/177 (85.88%), Postives = 164/177 (92.66%), Query Frame = -3
Query:  225 VHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRESVKD 755
            VHSIL+HK+ EDKIM LDSHKL+AASGEPGDRVQFTE++QKNVSLYQFRNGIPL+TAAAANFTRGELATALRK+PY VNIL+AGYDKE G SLYYIDYIATLHKVDK AFGYGSYFSLS MDRH+ S MSVEEA++LVDKCILEIRSRLV+APPNFVIKIVDKDGAREY WR S  D
Sbjct:   22 VHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVIAPPNFVIKIVDKDGAREYGWRISTAD 198          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_ORYSJ (Proteasome subunit beta type-2 OS=Oryza sativa subsp. japonica GN=PBD1 PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 7.217e-75
Identity = 139/183 (75.96%), Postives = 158/183 (86.34%), Query Frame = -3
Query:  207 VHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRESVKDTPVSSA 755
            V SILVHK++EDK+MVLDSHKL+ ASGEPGDRVQFTEFIQKN+ LYQFRN IPL+TAA ANFTRGELATALRK+PY VN+LLAGYD + G SLYYIDYIAT HK++K AFGYGSYF LS+MD+ +   MSVEEAVDLVDKCI EIR RLVVAP NF+IKIVDK+GAREYA R +  D+P  +A
Sbjct:   22 VQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIATFHKIEKGAFGYGSYFCLSLMDKLYRPDMSVEEAVDLVDKCIKEIRLRLVVAPQNFIIKIVDKEGAREYA-RRAYTDSPPEAA 203          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_DICDI (Proteasome subunit beta type-2 OS=Dictyostelium discoideum GN=psmB2 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.119e-42
Identity = 80/169 (47.34%), Postives = 118/169 (69.82%), Query Frame = -3
Query:  255 HSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKET---GPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAR 752
            HSI+  K +EDKI+ +D HKL+ ++GE GDRVQFTE+I KN+ LY  RN  P++T AAANF R ELAT++R  PY +N++LAGYDKE    G SLYY+DY+ +L K++    GY SYF L ++DRH    +S+E+ ++L+  C  E+++R +V+   + +K V  +G +
Sbjct:   23 HSIVKMKDDEDKILEIDGHKLLLSAGEAGDRVQFTEYISKNIKLYSLRNSYPMSTPAAANFIRNELATSIRSHPYSINLILAGYDKEVEDGGTSLYYMDYLGSLQKLNFGCHGYASYFLLGLLDRHHKCDLSLEDGINLMHLCTTELKTRFLVS-GKYTLKFVSSEGIK 190          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_RAT (Proteasome subunit beta type-2 OS=Rattus norvegicus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.193e-39
Identity = 79/164 (48.17%), Postives = 114/164 (69.51%), Query Frame = -3
Query:  261 SILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 749
            +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E AV+L+ KC+ E++ R ++  P F ++++DKDG
Sbjct:   24 NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRVIDKDG 187          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_MOUSE (Proteasome subunit beta type-2 OS=Mus musculus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.193e-39
Identity = 79/164 (48.17%), Postives = 114/164 (69.51%), Query Frame = -3
Query:  261 SILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 749
            +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E AV+L+ KC+ E++ R ++  P F ++++DKDG
Sbjct:   24 NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRVIDKDG 187          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_HUMAN (Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.886e-39
Identity = 79/167 (47.31%), Postives = 115/167 (68.86%), Query Frame = -3
Query:  252 SILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 749
            +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E AV+L+ KC+ E++ R ++  P F ++I+DK+G  +
Sbjct:   24 NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHD 190          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_BOVIN (Proteasome subunit beta type-2 OS=Bos taurus GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.422e-38
Identity = 78/167 (46.71%), Postives = 116/167 (69.46%), Query Frame = -3
Query:  252 SILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 749
            +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E+AV+L+ KC+ E++ R ++  P F ++I+D++G  +
Sbjct:   24 NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISREKAVELLRKCLEELQKRFILNLPTFSVRIIDRNGIHD 190          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_SCHPO (Probable proteasome subunit beta type-2 OS=Schizosaccharomyces pombe GN=SPAC31A2.04c PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 74/170 (43.53%), Postives = 111/170 (65.29%), Query Frame = -3
Query:  252 VHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 755
            V  I V K ++DK  +L+SH L+   GE GD   F E+I  N+SLY  R+ + L+  A A+FTR +LAT+LR + PY VNILLAGY+   G P L+++DY+AT  +V  A  GY S++ LS+ DR++   ++++EAV ++  C  E++ R+ +    F+ K+VDKDG RE
Sbjct:   22 VRGITVLKPDDDKSQILNSHNLMLYCGEAGDTTNFAEYIAANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKPDLTIDEAVRIMKLCFDELKKRMPIDFKGFICKVVDKDGIRE 191          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_PICGU (Probable proteasome subunit beta type-2 OS=Pichia guilliermondii GN=PRO2 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 77/167 (46.11%), Postives = 109/167 (65.27%), Query Frame = -3
Query:  255 ILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAR 746
            I V K  +DK   L+SH L+A SGE GD VQF E+IQ N  LY  R N   L+  A A+F R +LAT++R + PY VN+LLAGYD  TG PSL +IDY+ T  ++  AA GY  ++  S++D+H+  GM+ E+ +DL+ KCI E+ +R+ +      IK+VDK+G +
Sbjct:   25 ISVLKDTDDKTRQLNSHNLMAYSGEAGDTVQFAEYIQANTQLYTMRENDTELSPKATASFVRNQLATSIRSRKPYQVNVLLAGYDTNTGKPSLNWIDYLGTQVELPYAAHGYAGFYCTSLLDKHYKKGMNFEDGLDLLKKCIKELETRMPIDFKGCYIKVVDKEGIK 191          
The following BLAST results are available for this feature:
BLAST of CN185804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSB2A_ARATH2.163e-8788.14Proteasome subunit beta type-2-A OS=Arabidopsis th... [more]
PSB2B_ARATH7.693e-8585.88Proteasome subunit beta type-2-B OS=Arabidopsis th... [more]
PSB2_ORYSJ7.217e-7575.96Proteasome subunit beta type-2 OS=Oryza sativa sub... [more]
PSB2_DICDI2.119e-4247.34Proteasome subunit beta type-2 OS=Dictyostelium di... [more]
PSB2_RAT2.193e-3948.17Proteasome subunit beta type-2 OS=Rattus norvegicu... [more]
PSB2_MOUSE2.193e-3948.17Proteasome subunit beta type-2 OS=Mus musculus GN=... [more]
PSB2_HUMAN4.886e-3947.31Proteasome subunit beta type-2 OS=Homo sapiens GN=... [more]
PSB2_BOVIN1.422e-3846.71Proteasome subunit beta type-2 OS=Bos taurus GN=PS... [more]
PSB2_SCHPO7.301e-3543.53Probable proteasome subunit beta type-2 OS=Schizos... [more]
PSB2_PICGU7.301e-3546.11Probable proteasome subunit beta type-2 OS=Pichia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185804 ID=CN185804; Name=CN185804; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTACGTGAGGAACACAATCACCACACGAACCCCTT
TAATTGATTTCCAGATTCAAATGACAGATAAGGAGTTTAAAGTTCTTTTT
AACTAATGAACTAATCTGAAACATAAGAAAAATCAAACAAAACAGTTTTT
GAGCAGTCAAATATAACATTATACCAATAAGTCCGACTCAGATTCAGACC
ACCTCATGCTGAAGAAACAGGGGTGTCCTTGACAGATTCACGCCAAGCAT
ACTCCCGTGCTCCATCCTTATCGACAATCTTGATGACAAAGTTTGGTGGT
GCCACCACCAGCCTGGATCGAATCTCCAGTATGCACTTATCAACCAAGTC
TACAGCTTCTTCAACTGACATGCCACTGTGGAAATGTCGGTCCATCATGG
AGAGCGAAAAATAGGATCCATAACCAAAAGCTGCCTTATCAACTTTGTGA
AGGGTTGCAATGTAGTCAATGTAGTAGAGAGATGGTCCTGTCTCCTTGTC
ATACCCAGCTAGAAGGATGTTAACCATGTAAGGGCTCTTTCTCAGAGCAG
TAGCAAGCTCTCCTCGGGTAAAGTTCGCCGCCGCAGCAGTAGTCAATGGA
ATTCCGTTACGAAATTGATACAACGACACATTCTTCTGAATGAACTCCGT
AAATTGAACACGGTCACCGGGTTCGCCACTGGCGGCGATGAGTTTGTGAG
AGTCGAGGACCATGATCTTGTCCTCGTTCGATTTATGAACCAAGATACTG
TGGACTG
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